dacha dachshund a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: dachaprovided by ZNC
Official Full Name: dachshund aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-020402-3
See related: Ensembl:ENSDARG00000010132 AllianceGenome:ZFIN:ZDB-GENE-020402-3
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: cb907
Summary: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within inner ear development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in several structures, including nervous system; neural crest; optic vesicle; otic vesicle; and solid lens vesicle. Orthologous to human DACH2 (dachshund family transcription factor 2). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 21

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (34363972..34658286, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	21	NC_007132.6 (34329486..34623829, complement)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Isolation of three zebrafish dachshund homologues and their expression in sensory organs, the central nervous system and pectoral fin buds
Title: Isolation of three zebrafish dachshund homologues and their expression in sensory organs, the central nervous system and pectoral fin buds.

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General gene information

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Markers

fc59h08.x1 (e-PCR)
- UniSTS:194145

fj83h10.y1 (e-PCR)
- UniSTS:200064

fk65g02.x1 (e-PCR)
- UniSTS:201379

G39849 (e-PCR)
- UniSTS:66550

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within inner ear development	IMP Inferred from Mutant Phenotype more info	PubMed

General protein information

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Preferred Names: dachshund a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_152955.2 → NP_694487.2 dachshund a

Status: VALIDATED

Source sequence(s)

BX323073, BX640583, BX927334, BX950867, CT573493

UniProtKB/TrEMBL

A0A8M1PDQ3, F1R0U6

Related

ENSDARP00000005001.7, ENSDART00000023038.8

Conserved Domains (2) summary

TIGR02168
Location:459 → 593

SMC_prok_B; chromosome segregation protein SMC, common bacterial type

cd21081
Location:63 → 157

DHD_Dac; Dachshund-homology domain found in the retinal determination protein Dachshund and similar proteins