higd1a HIG1 hypoxia inducible domain family, member 1A [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: higd1aprovided by ZNC
Official Full Name: HIG1 hypoxia inducible domain family, member 1Aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-030826-15
See related: Ensembl:ENSDARG00000022303 AllianceGenome:ZFIN:ZDB-GENE-030826-15
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: hig1; cb659; zgc:77692; wu:fb57h02
Summary: Predicted to be involved in mitochondrial respirasome assembly. Predicted to be located in membrane. Predicted to be active in mitochondrion. Is expressed in several structures, including axis; gill; musculature system; solid lens vesicle; and spleen. Orthologous to human HIGD1A (HIG1 hypoxia inducible domain family member 1A). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: all
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Genomic context

Location:: chromosome: 2

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (2168547..2173749)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (1825741..1830943)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb57h02.x1 (e-PCR)
- UniSTS:190795

fb57h02.x1 (e-PCR)
- UniSTS:190796

fl01c01.x1 (e-PCR)
- UniSTS:201840

AI477599 (e-PCR)
- UniSTS:206452

fj57e06.x1 (e-PCR)
- UniSTS:199598

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
involved_in mitochondrial respirasome assembly	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: HIG1 domain family member 1A, mitochondrial

Names: hypoxia induced gene 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.