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    LOC100150229 zinc finger and SCAN domain-containing protein 5B [ Danio rerio (zebrafish) ]

    Gene ID: 100150229, updated on 12-Sep-2024

    Summary

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    Gene symbol
    LOC100150229
    Gene description
    zinc finger and SCAN domain-containing protein 5B
    See related
    Ensembl:ENSDARG00000096962
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Orthologs
    all
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    Genomic context

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    See LOC100150229 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (38250990..38255533, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (37650822..37655553, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene hydroxysteroid (20-beta) dehydrogenase 2 Neighboring gene solute carrier family 12 member 9 Neighboring gene guanine nucleotide binding protein (G protein), beta polypeptide 2 Neighboring gene misshapen-like kinase 1 Neighboring gene uncharacterized LOC137490148

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger and SCAN domain-containing protein 5B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      38250990..38255533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001923522.8 → XP_001923557.1  zinc finger and SCAN domain-containing protein 5B

      UniProtKB/TrEMBL
      A0A8M1QRA5
      Related
      ENSDART00000156291.2
      Conserved Domains (4) summary
      COG5048
      Location:351 → 413
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:356 → 376
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:354 → 376
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:369 → 393
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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