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    saal1 serum amyloid A-like 1 [ Danio rerio (zebrafish) ]

    Gene ID: 393104, updated on 9-Dec-2024

    Summary

    Official Symbol
    saal1provided by ZNC
    Official Full Name
    serum amyloid A-like 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-725
    See related
    Ensembl:ENSDARG00000018681 AllianceGenome:ZFIN:ZDB-GENE-040426-725
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:55505
    Summary
    Predicted to be involved in positive regulation of synoviocyte proliferation. Predicted to be located in nucleus. Predicted to be active in nucleoplasm. Is expressed in liver. Orthologous to human SAAL1 (serum amyloid A like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
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    Genomic context

    See saal1 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (8180544..8201983, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (8056452..8077891, complement)

    Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel, Shaw-related subfamily, member 1b Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene tryptophan hydroxylase 1 (tryptophan 5-monooxygenase) a Neighboring gene mucin-2 Neighboring gene intestinal mucin-like protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • MGC55505

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in positive regulation of synoviocyte proliferation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_200135.2NP_956429.2  protein saal1

      See identical proteins and their annotated locations for NP_956429.2

      Status: VALIDATED

      Source sequence(s)
      BC044415, CT654735
      UniProtKB/Swiss-Prot
      Q803M5
      Related
      ENSDARP00000011636.7, ENSDART00000006579.9

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007136.7 Reference GRCz11 Primary Assembly

      Range
      8180544..8201983 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018395187.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      136713..156806 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)