zgc:76872 zgc:76872 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: zgc:76872provided by ZNC
Official Full Name: zgc:76872provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1794
See related: AllianceGenome:ZFIN:ZDB-GENE-040426-1794
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Summary: Predicted to enable metal ion binding activity. [provided by Alliance of Genome Resources, Dec 2024]
Annotation information: Annotation category: partial on reference assembly
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	1	NC_007112.7 (59050171..59053580, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	1	NC_007112.6 (58511301..58514710, complement)

Chromosome 1 - NC_007112.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IBA Inferred from Biological aspect of Ancestor more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in regulation of transcription by RNA polymerase II	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: zinc finger and BTB domain-containing protein 45

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205706.1 → NP_991269.1 zinc finger and BTB domain-containing protein 45

See identical proteins and their annotated locations for NP_991269.1

Status: PROVISIONAL

Source sequence(s)

BC065986

UniProtKB/TrEMBL

Q6NZS5

Conserved Domains (6) summary

smart00225
Location:35 → 127

BTB; Broad-Complex, Tramtrack and Bric a brac

COG5048
Location:446 → 526

COG5048; FOG: Zn-finger [General function prediction only]

sd00017
Location:459 → 479

ZF_C2H2; C2H2 Zn finger [structural motif]

pfam00096
Location:513 → 535

zf-C2H2; Zinc finger, C2H2 type

pfam00651
Location:24 → 123

BTB; BTB/POZ domain

pfam13465
Location:527 → 552

zf-H2C2_2; Zinc-finger double domain