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    si:zfos-464b6.2 si:zfos-464b6.2 [ Danio rerio (zebrafish) ]

    Gene ID: 794433, updated on 9-Dec-2024

    Summary

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    Official Symbol
    si:zfos-464b6.2provided by ZNC
    Official Full Name
    si:zfos-464b6.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-5337
    See related
    Ensembl:ENSDARG00000054363 AllianceGenome:ZFIN:ZDB-GENE-030131-5337
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd14a06; wu:fd14a06
    Summary
    Predicted to enable glycosyltransferase activity. Predicted to be involved in glycosylation. Predicted to be located in membrane. Predicted to be active in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    all
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    Genomic context

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    See si:zfos-464b6.2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (49273987..49282875, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (49279059..49291688, complement)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene si:ch211-136a13.1 Neighboring gene Yip1 interacting factor homolog B (S. cerevisiae) Neighboring gene sb:cb81 Neighboring gene si:cabz01090165.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning of pigeon UDP-galactose:beta-D-galactoside alpha1,4-galactosyltransferase and UDP-galactose:beta-D-galactoside beta1,4-galactosyltransferase, two novel enzymes catalyzing the formation of Gal alpha1-4Gal beta1-4Gal beta1-4GlcNAc sequence. Suzuki N, et al. J Biol Chem, 2010 Feb 19. PMID 19959475, Free PMC Article
    2. Global analysis of the haematopoietic and endothelial transcriptome during zebrafish development. Cannon JE, et al. Mech Dev, 2013 Feb. PMID 23072875, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hexosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein si:zfos-464b6.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      49273987..49282875 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003200494.6 → XP_003200542.1  uncharacterized protein si:zfos-464b6.2

      UniProtKB/TrEMBL
      A0A8M1RMQ8, A0A8M1RT75, E7FE65
      Related
      ENSDARP00000071026.4, ENSDART00000076554.6
      Conserved Domains (1) summary
      pfam01697
      Location:201 → 453
      Glyco_transf_92; Glycosyltransferase family 92
    Nucleotide Protein Strain
    Heading Accession and Version

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