pdzk1ip1 PDZK1 interacting protein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: pdzk1ip1provided by ZNC
Official Full Name: PDZK1 interacting protein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030616-128
See related: Ensembl:ENSDARG00000017127 AllianceGenome:ZFIN:ZDB-GENE-030616-128
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: map17l; pdzk1ip1l; wu:fj67d10; wu:fj86c06; si:dz129i22.3
Summary: Acts upstream of or within hemopoiesis. Predicted to be located in membrane. Is expressed in liver. Orthologous to human PDZK1IP1 (PDZK1 interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (16556235..16566815)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (16529965..16540545)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Altered Visual Function in a Larval Zebrafish Knockout of Neurodevelopmental Risk Gene pdzk1.
Title: Altered Visual Function in a Larval Zebrafish Knockout of Neurodevelopmental Risk Gene pdzk1.

Submit: New GeneRIF Correction

General gene information

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Markers

fj89c10.y1 (e-PCR)
- UniSTS:200244

fj67d10.x1 (e-PCR)
- UniSTS:188767

fj86c06.x1 (e-PCR)
- UniSTS:200144

Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within hemopoiesis	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: PDZK1-interacting protein 1

Names: PDZK1 interacting protein 1, like; ZDB-PUB-030508-1, like; map17; membrane-associated protein 17 like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.