U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tex13a testis expressed 13A [ Mus musculus (house mouse) ]

    Gene ID: 67944, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tex13aprovided by MGI
    Official Full Name
    testis expressed 13Aprovided by MGI
    Primary source
    MGI:MGI:1915194
    See related
    Ensembl:ENSMUSG00000071686 AllianceGenome:MGI:1915194
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700025D03Rik
    Summary
    Predicted to enable mRNA binding activity. Orthologous to several human genes including TEX13A (testis expressed 13A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward testis adult (RPKM 19.4) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tex13a in Genome Data Viewer
    Location:
    X F1; X 60.22 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (137108907..137110357, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (138208158..138209580, complement)

    Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_47981 Neighboring gene predicted gene 8036 Neighboring gene interleukin 1 receptor accessory protein-like 2 Neighboring gene STARR-seq mESC enhancer starr_47982 Neighboring gene STARR-seq mESC enhancer starr_47983 Neighboring gene protein transport protein Sec61 subunit gamma pseudogene Neighboring gene predicted gene, 22057 Neighboring gene predicted gene, 23958

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    testis-expressed protein 13A

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026469.4NP_080745.2  testis-expressed protein 13A

      See identical proteins and their annotated locations for NP_080745.2

      Status: VALIDATED

      Source sequence(s)
      AL672205
      Consensus CDS
      CCDS41142.1
      UniProtKB/TrEMBL
      A2AFS9
      Related
      ENSMUSP00000094038.3, ENSMUST00000096314.3
      Conserved Domains (3) summary
      smart00547
      Location:347369
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:349368
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:5152
      TEX13; Testis-expressed sequence 13 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000086.8 Reference GRCm39 C57BL/6J

      Range
      137108907..137110357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006528604.2XP_006528667.1  testis-expressed protein 13A isoform X1

      Conserved Domains (3) summary
      smart00547
      Location:297319
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:299318
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:53102
      TEX13; Testis-expressed sequence 13 protein family
    2. XM_006528605.1XP_006528668.1  testis-expressed protein 13A isoform X2

      Conserved Domains (3) summary
      smart00547
      Location:228250
      ZnF_RBZ; Zinc finger domain
      sd00025
      Location:230249
      zf-RanBP2; RanBP2-type Zn finger [structural motif]
      pfam15186
      Location:133
      TEX13; Testis-expressed sequence 13 protein family