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    TRFL2 TRF-like 2 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837268, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TRFL2
    Official Full Name
    TRF-like 2
    Primary source
    TAIR:AT1G07540
    Locus tag
    AT1G07540
    See related
    Araport:AT1G07540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F22G5.8; F22G5_8; TRF-like 2
    Summary
    Arabidopsis thaliana telomere-binding protein, putative (At1g07540)
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    Genomic context

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    See TRFL2 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (2318143..2321664, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene FTSH protease 10 Neighboring gene GRAS family transcription factor Neighboring gene SCARECROW-like 14 Neighboring gene ncRNA Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A C-terminal Myb extension domain defines a novel family of double-strand telomeric DNA-binding proteins in Arabidopsis. Karamysheva ZN, et al. J Biol Chem, 2004 Nov 12. PMID 15364931
    2. An armadillo-domain protein participates in a telomerase interaction network. Dokládal L, et al. Plant Mol Biol, 2018 Jul. PMID 29948659
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRF-like 2
    NP_001318943.1
    • TRF-like 2 (TRFL2); FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; EXPRESSED IN: petal, leaf whorl, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: TRF-like 1 (TAIR:AT3G46590.2); Has 350 Blast hits to 338 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 10; Fungi - 4; Plants - 309; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      2318143..2321664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001331707.1 → NP_001318943.1  TRF-like 2 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6R0E3, Q9LNX7
      UniProtKB/TrEMBL
      A0A5S9T465, A0A654ECS4
      Conserved Domains (1) summary
      cd11660
      Location:529 → 579
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6R0E3.2

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