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    F-box protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839645, updated on 18-Sep-2024

    Summary

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    Official Full Name
    F-box protein (DUF295)
    Primary source
    TAIR:AT1G27540
    Locus tag
    AT1G27540
    See related
    Araport:AT1G27540
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T17H3.4; T17H3_4
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (9565913..9567906, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ubiquitin-fold modifier-conjugating enzyme Neighboring gene phosphatidylinositol 3/4-kinase Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The F-Box/DUF295 Brassiceae specific 2 is involved in ABA-inhibited seed germination and seedling growth in Arabidopsis. Gong C, et al. Plant Sci, 2022 Oct. PMID 35820550
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001332767.1
    NM_001332768.1
    NM_102518.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in response to abscisic acid IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    F-box protein (DUF295)
    NP_001319091.1
    • Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    NP_001319092.1
    • Protein of unknown function (DUF295); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 278 Blast hits to 271 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 278; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      9565913..9567906 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001332767.1 → NP_001319091.1  F-box protein (DUF295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDH7, Q9SXC7

    2. NM_102518.3 → NP_174074.1  F-box protein (DUF295) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_174074.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDH7, Q9SXC7
      Conserved Domains (1) summary
      pfam03478
      Location:335 → 388
      DUF295; Protein of unknown function (DUF295)

    3. NM_001332768.1 → NP_001319092.1  F-box protein (DUF295) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DZS4, F4HSY3
      Conserved Domains (1) summary
      pfam03478
      Location:305 → 358
      DUF295; Protein of unknown function (DUF295)
    Nucleotide Protein
    Heading Accession and Version

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