U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AIR9 Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818033, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AIR9
    Official Full Name
    Outer arm dynein light chain 1 protein
    Primary source
    TAIR:AT2G34680
    Locus tag
    AT2G34680
    See related
    Araport:AT2G34680
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AUXIN-INDUCED IN ROOT CULTURES 9; T29F13.11; T29F13_11
    Summary
    isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AIR9 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    38
    Sequence:
    Chromosome: 2; NC_003071.7 (14616601..14629207, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene multidrug resistance-associated protein 2 Neighboring gene benzoyl-CoA reductase subunit C, putative (DUF630 and DUF632) Neighboring gene Glycolipid transfer protein (GLTP) family protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Microtubule-associated AIR9 recognizes the cortical division site at preprophase and cell-plate insertion. Buschmann H, et al. Curr Biol, 2006 Oct 10. PMID 17027491
    2. Division Plane Orientation Defects Revealed by a Synthetic Double Mutant Phenotype. Mir R, et al. Plant Physiol, 2018 Jan. PMID 29146775, Free PMC Article
    3. Arabidopsis KCBP interacts with AIR9 but stays in the cortical division zone throughout mitosis via its MyTH4-FERM domain. Buschmann H, et al. J Cell Sci, 2015 Jun 1. PMID 25908862
    4. Isolation and characterization of cDNA clones corresponding with mRNAs that accumulate during auxin-induced lateral root formation. Neuteboom LW, et al. Plant Mol Biol, 1999 Jan. PMID 10080694
    5. Arabidopsis thaliana MSI4/FVE associates with members of a novel family of plant specific PWWP/RRM domain proteins. Kenzior A, et al. Plant Mol Biol, 2015 Mar. PMID 25600937

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. new functions for TAN1 and AIR9 during phragmoplast guidance and root morphogenesis, are reported.
      Title: Division Plane Orientation Defects Revealed by a Synthetic Double Mutant Phenotype.
    2. AIR9 has a role in the maturation of those cell plates successfully contacting the "programmed" cortical division site.
      Title: Microtubule-associated AIR9 recognizes the cortical division site at preprophase and cell-plate insertion.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_129022.8

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within lateral root morphogenesis IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within response to auxin IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cortical microtubule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in phragmoplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 
    located_in preprophase band IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    Outer arm dynein light chain 1 protein
    NP_181015.7
    • AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9); INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 5746 Blast hits to 1796 proteins in 310 species: Archae - 0; Bacteria - 1053; Metazoa - 771; Fungi - 422; Plants - 290; Viruses - 42; Other Eukaryotes - 3168 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      14616601..14629207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001336523.1 → NP_001324697.1  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VNR9, A0A1P8B0X3, A0A5S9X430

    2. NM_129022.8 → NP_181015.7  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_181015.7

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IIU4, O64588, Q00NU6, Q0WPR3
      UniProtKB/TrEMBL
      A0A178VNR9, A0A5S9X430
      Conserved Domains (4) summary
      cd00116
      Location:288 → 429
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:272 → 293
      LRR_RI; leucine-rich repeat [structural motif]
      pfam12799
      Location:338 → 375
      LRR_4; Leucine Rich repeats (2 copies)
      pfam13855
      Location:292 → 350
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IIU4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.