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    Paired amphipathic helix (PAH2) superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 839037, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Paired amphipathic helix (PAH2) superfamily protein
    Primary source
    TAIR:AT1G24230
    Locus tag
    AT1G24230
    See related
    Araport:AT1G24230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3I6.16; F3I6_16
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (8584039..8585135, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene paired amphipathic helix repeat-containing protein Neighboring gene Ribosomal protein L19 family protein Neighboring gene Paired amphipathic helix (PAH2) superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
    2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription corepressor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Paired amphipathic helix (PAH2) superfamily protein
    NP_173833.1
    • Paired amphipathic helix (PAH2) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Paired amphipathic helix (InterPro:IPR003822); BEST Arabidopsis thaliana protein match is: Paired amphipathic helix (PAH2) superfamily protein (TAIR:AT1G23810.1); Has 1242 Blast hits to 659 proteins in 169 species: Archae - 0; Bacteria - 0; Metazoa - 390; Fungi - 362; Plants - 421; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      8584039..8585135 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_102269.1 → NP_173833.1  Paired amphipathic helix (PAH2) superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173833.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EDN1, B2GVM8
      Conserved Domains (1) summary
      pfam02671
      Location:32 → 76
      PAH; Paired amphipathic helix repeat
    Nucleotide Protein
    Heading Accession and Version

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