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    crooked neck protein, putative / cell cycle protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820511, updated on 18-Sep-2024

    Summary

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    Official Full Name
    crooked neck protein, putative / cell cycle protein
    Primary source
    TAIR:AT3G13210
    Locus tag
    AT3G13210
    See related
    Araport:AT3G13210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    8
    Sequence:
    Chromosome: 3; NC_003074.8 (4244900..4247846)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene Cwf15 / Cwc15 cell cycle control family protein Neighboring gene miscRNA Neighboring gene ABC-2 type transporter family protein Neighboring gene GBF-interacting protein 1 Neighboring gene tRNA-Leu

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of nuclear pore complex components in Arabidopsis thaliana. Tamura K, et al. Plant Cell, 2010 Dec. PMID 21189294, Free PMC Article
    2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    3. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_112161.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    crooked neck protein, putative / cell cycle protein
    NP_187927.1
    • crooked neck protein, putative / cell cycle protein, putative; FUNCTIONS IN: binding; INVOLVED IN: mRNA processing, RNA processing; LOCATED IN: intracellular, nucleus; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Suppressor of forked (InterPro:IPR008847); BEST Arabidopsis thaliana protein match is: crooked neck protein, putative / cell cycle protein, putative (TAIR:AT5G41770.1); Has 4156 Blast hits to 2031 proteins in 228 species: Archae - 0; Bacteria - 10; Metazoa - 1529; Fungi - 1300; Plants - 749; Viruses - 0; Other Eukaryotes - 568 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      4244900..4247846
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_112161.3 → NP_187927.1  crooked neck protein, putative / cell cycle protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_187927.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4JC74, Q9LK51
      Conserved Domains (3) summary
      pfam02184
      Location:173 → 201
      HAT; HAT (Half-A-TPR) repeat
      sd00006
      Location:90 → 120
      TPR; TPR repeat [structural motif]
      pfam05843
      Location:452 → 509
      Suf; Suppressor of forked protein (Suf)
    Nucleotide Protein
    Heading Accession and Version

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