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    Tetratricopeptide repeat (TPR)-like superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819568, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Primary source
    TAIR:AT3G04130
    Locus tag
    AT3G04130
    See related
    Araport:AT3G04130
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T6K12.25; T6K12_25
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (1083772..1086418)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene glutamate receptor 1.1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase C subunit 1 Neighboring gene Ankyrin repeat family protein Neighboring gene RmlC-like cupins superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001035553.2
    NM_111284.3

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Tetratricopeptide repeat (TPR)-like superfamily protein
    NP_001030630.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22670.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_566222.1
    • Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22670.1); Has 33193 Blast hits to 12271 proteins in 280 species: Archae - 2; Bacteria - 32; Metazoa - 336; Fungi - 402; Plants - 31397; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      1083772..1086418
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001035553.2 → NP_001030630.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001030630.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8W9
      UniProtKB/TrEMBL
      A0A178VE27, A0A5S9X8W9, A0A654F5H9, A0A7G2EJW2, B9DFJ7
      Conserved Domains (4) summary
      PLN03218
      Location:177 → 416
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:439 → 470
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:332 → 359
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:399 → 449
      PPR_2; PPR repeat family

    2. NM_111284.3 → NP_566222.1  Tetratricopeptide repeat (TPR)-like superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566222.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9M8W9
      UniProtKB/TrEMBL
      A0A178VE27, A0A5S9X8W9, A0A654F5H9, A0A7G2EJW2, B9DFJ7
      Conserved Domains (4) summary
      PLN03218
      Location:177 → 416
      PLN03218; maturation of RBCL 1; Provisional
      TIGR00756
      Location:439 → 470
      PPR; pentatricopeptide repeat domain (PPR motif)
      sd00004
      Location:332 → 359
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:399 → 449
      PPR_2; PPR repeat family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9M8W9.2

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