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    ARID/BRIGHT DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816247, updated on 18-Sep-2024

    Summary

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    Official Full Name
    ARID/BRIGHT DNA-binding domain-containing protein
    Primary source
    TAIR:AT2G17410
    Locus tag
    AT2G17410
    See related
    Araport:AT2G17410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AT2G17400; F5J6.17; F5J6_17
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    14
    Sequence:
    Chromosome: 2; NC_003071.7 (7558916..7563781)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene associated protein 19 Neighboring gene ankyrin repeat-containing 2B Neighboring gene NADPH-dependent thioredoxin reductase A Neighboring gene Seven transmembrane MLO family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis. Miller MJ, et al. Proc Natl Acad Sci U S A, 2010 Sep 21. PMID 20813957, Free PMC Article
    2. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. Tan LM, et al. EMBO J, 2018 Oct 1. PMID 30104406, Free PMC Article
    3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001202611.1
    NM_001335547.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of DNA-templated transcription TAS
    Traceable Author Statement
    more info
    		 PubMed 
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    part_of protein-containing complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ARID/BRIGHT DNA-binding domain-containing protein
    NP_001189540.1
    • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2).
    NP_179333.2
    • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 5354 Blast hits to 4027 proteins in 528 species: Archae - 33; Bacteria - 832; Metazoa - 1934; Fungi - 748; Plants - 402; Viruses - 44; Other Eukaryotes - 1361 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      7558916..7563781
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127296.3 → NP_179333.2  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179333.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YT6, Q940Y3
      UniProtKB/TrEMBL
      A0A654ETM9
      Conserved Domains (2) summary
      cd00298
      Location:705 → 781
      ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
      smart00501
      Location:495 → 583
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

    2. NM_001202611.1 → NP_001189540.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001189540.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654ETM9, F4INH0
      Conserved Domains (2) summary
      cd00298
      Location:699 → 775
      ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
      smart00501
      Location:495 → 583
      BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

    3. NM_001335547.1 → NP_001325412.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q67YT6, Q940Y3
      UniProtKB/TrEMBL
      A0A654ETM9
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q940Y3.1

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