U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LBD10 LOB domain-containing protein 10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 816897, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    LBD10
    Official Full Name
    LOB domain-containing protein 10
    Primary source
    TAIR:AT2G23660
    Locus tag
    AT2G23660
    See related
    Araport:AT2G23660
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F26B6.31; F26B6_31; LOB domain-containing protein 10
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LBD10 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Sequence:
    Chromosome: 2; NC_003071.7 (10060065..10061822, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Reticulan like protein B13 Neighboring gene tRNA-Met Neighboring gene ncRNA Neighboring gene homolog of Synechocystis YCF37 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis. Kim MJ, et al. Plant J, 2015 Mar. PMID 25611322
    2. ZmMS1/ZmLBD30-orchestrated transcriptional regulatory networks precisely control pollen exine development. Hou Q, et al. Mol Plant, 2023 Aug 7. PMID 37501369
    3. Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses. Efroni I, et al. Dev Cell, 2013 Feb 25. PMID 23449474, Free PMC Article
    4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A combinatorial role of LBD10 with LBD27 is crucial for male gametophyte development in Arabidopsis. LBD10 and LBD27 interact to form a heterodimer for nuclear localization.
      Title: LATERAL ORGAN BOUNDARIES DOMAIN (LBD)10 interacts with SIDECAR POLLEN/LBD27 to control pollen development in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    NM_001161058.2
    NM_001335860.1
    NM_127929.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    LOB domain-containing protein 10
    NP_001154530.1
    • LOB domain-containing protein 10 (LBD10); INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_179946.1
    • LOB domain-containing protein 10 (LBD10); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883), Asymmetric leaves, AS2/LOB (InterPro:IPR017414); BEST Arabidopsis thaliana protein match is: ASYMMETRIC LEAVES 2-like 1 (TAIR:AT5G66870.1); Has 1085 Blast hits to 1079 proteins in 38 species: Archae - 0; Bacteria - 8; Metazoa - 18; Fungi - 1; Plants - 1055; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      10060065..10061822 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_127929.3 → NP_179946.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179946.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
      Conserved Domains (1) summary
      pfam03195
      Location:6 → 103
      DUF260; Protein of unknown function DUF260

    2. NM_001161058.2 → NP_001154530.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154530.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
      Conserved Domains (1) summary
      pfam03195
      Location:6 → 103
      DUF260; Protein of unknown function DUF260

    3. NM_001335860.1 → NP_001323843.1  LOB domain-containing protein 10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B7XG56, O64836
      UniProtKB/TrEMBL
      A0A654EVH6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O64836.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools