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    uncharacterized protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838110, updated on 18-Sep-2024

    Summary

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    Official Full Name
    uncharacterized protein
    Primary source
    TAIR:AT1G15400
    Locus tag
    AT1G15400
    See related
    Araport:AT1G15400
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9L1.35; F9L1_35
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Sequence:
    Chromosome: 1; NC_003070.9 (5295756..5297075, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Lactoylglutathione lyase / glyoxalase I family protein Neighboring gene cotton fiber protein Neighboring gene peptide deformylase 1A Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene aspartate-glutamate racemase family Neighboring gene late embryogenesis abundant-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The MAPK substrate MASS proteins regulate stomatal development in Arabidopsis. Xue X, et al. PLoS Genet, 2020 Apr. PMID 32240168, Free PMC Article
    2. Large-scale analysis of in vivo phosphorylated membrane proteins by immobilized metal ion affinity chromatography and mass spectrometry. Nühse TS, et al. Mol Cell Proteomics, 2003 Nov. PMID 14506206
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001084072.1
    NM_101409.3
    NM_179339.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_001077541.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 84 Blast hits to 84 proteins in 17 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_563975.2
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
    NP_849670.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G80180.1); Has 82 Blast hits to 82 proteins in 16 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5295756..5297075 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101409.3 → NP_563975.2  uncharacterized protein AT1G15400 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563975.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DTE4
      Conserved Domains (1) summary
      pfam15697
      Location:1 → 126
      DUF4666; Domain of unknown function (DUF4666)

    2. NM_001084072.1 → NP_001077541.1  uncharacterized protein AT1G15400 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077541.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A8MRG0, Q3EDC0, Q9XI29
      Conserved Domains (1) summary
      pfam15697
      Location:1 → 126
      DUF4666; Domain of unknown function (DUF4666)

    3. NM_179339.2 → NP_849670.1  uncharacterized protein AT1G15400 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849670.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WAM4, A0A5S9UIY8
      Conserved Domains (1) summary
      pfam15697
      Location:1 → 126
      DUF4666; Domain of unknown function (DUF4666)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9XI29.2

    Gene LinkOut

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