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    helicase with zinc finger protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 825343, updated on 18-Sep-2024

    Summary

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    Official Full Name
    helicase with zinc finger protein
    Primary source
    TAIR:AT3G61700
    Locus tag
    AT3G61700
    See related
    Araport:AT3G61700
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (22835127..22839188)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene nucleotidyltransferase Neighboring gene ncRNA Neighboring gene AUTOPHAGY 6 Neighboring gene tRNA-Gly

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    NM_001084856.2
    NM_116035.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    helicase with zinc finger protein
    NP_001078325.1
    • Plant protein 1589 of unknown function; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT2G46420.1); Has 265 Blast hits to 263 proteins in 31 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 3; Plants - 223; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
    NP_191729.2
    • Plant protein 1589 of unknown function; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP01589, plant (InterPro:IPR006476); BEST Arabidopsis thaliana protein match is: Plant protein 1589 of unknown function (TAIR:AT2G46420.1); Has 261 Blast hits to 259 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 225; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      22835127..22839188
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001340121.1 → NP_001327945.1  helicase with zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XNK0, A0A654FJU3, Q56XY3
      Conserved Domains (1) summary
      TIGR01589
      Location:55 → 111
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    2. NM_001340122.1 → NP_001327944.1  helicase with zinc finger protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178VJ35, A0A1I9LTV9, A0A384K9N6, A0A5S9XNK0

    3. NM_001084856.2 → NP_001078325.1  helicase with zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001078325.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XNK0, A0A7G2EVM9, A8MQR1
      Conserved Domains (1) summary
      TIGR01589
      Location:55 → 111
      A_thal_3526; uncharacterized plant-specific domain TIGR01589

    4. NM_116035.3 → NP_191729.2  helicase with zinc finger protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191729.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9XNK0, A0A654FJU3, Q56XY3
      Conserved Domains (1) summary
      TIGR01589
      Location:55 → 111
      A_thal_3526; uncharacterized plant-specific domain TIGR01589
    Nucleotide Protein
    Heading Accession and Version

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