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    iPGAM1 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 837507, updated on 18-Sep-2024

    Summary

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    Official Symbol
    iPGAM1
    Official Full Name
    Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
    Primary source
    TAIR:AT1G09780
    Locus tag
    AT1G09780
    See related
    Araport:AT1G09780
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    2; 3-biphosphoglycerate-independent phosphoglycerate mutase 1; F21M12.16; F21M12_16
    Summary
    Encodes a 2,3-biphosphoglycerate-independent phosphoglycerate mutase that is involved in pollen development and stomatal movement.
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    Genomic context

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    See iPGAM1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (3165370..3167924, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Cysteine proteinases superfamily protein Neighboring gene Adenine nucleotide alpha hydrolases-like superfamily protein Neighboring gene Eukaryotic aspartyl protease family protein Neighboring gene U2 small nuclear ribonucleoprotein A Neighboring gene cell division cycle 5 Neighboring gene COBRA-like protein 6 precursor Neighboring gene Cox19 family protein (CHCH motif)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana. Zhao Z, et al. J Exp Bot, 2011 Oct. PMID 21813794, Free PMC Article
    2. Proteome analysis of cold stress response in Arabidopsis thaliana using DIGE-technology. Amme S, et al. J Exp Bot, 2006. PMID 16574749
    3. Enzymes of glycolysis are functionally associated with the mitochondrion in Arabidopsis cells. Giegé P, et al. Plant Cell, 2003 Sep. PMID 12953116, Free PMC Article
    4. Protein and metabolite composition of Arabidopsis stress granules. Kosmacz M, et al. New Phytol, 2019 May. PMID 30664249
    5. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. At1g09780 and At3g08590 has critical roles in stomatal movement, vegetative growth, and pollen production.
      Title: The glycolytic enzyme, phosphoglycerate mutase, has critical roles in stomatal movement, vegetative growth, and pollen production in Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_100850.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    enables manganese ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in glucose catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in glycolytic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in pollen development IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to abscisic acid IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to blue light IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in response to carbon dioxide IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within response to cold IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within stomatal movement IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in stomatal movement IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast HDA PubMed 
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in cytoplasmic stress granule IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in extracellular region HDA PubMed 
    located_in mitochondrial envelope IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
    NP_563852.1
    • Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; FUNCTIONS IN: manganese ion binding, phosphoglycerate mutase activity, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity, catalytic activity, metal ion binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrial envelope, cytosol, chloroplast, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Alkaline phosphatase-like, alpha/beta/alpha (InterPro:IPR017849), Metalloenzyme (InterPro:IPR006124), BPG-independent PGAM, N-terminal (InterPro:IPR011258), Alkaline-phosphatase-like, core domain (InterPro:IPR017850), Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (InterPro:IPR005995); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent (TAIR:AT3G08590.2); Has 4822 Blast hits to 4813 proteins in 1698 species: Archae - 54; Bacteria - 3035; Metazoa - 34; Fungi - 85; Plants - 379; Viruses - 0; Other Eukaryotes - 1235 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      3165370..3167924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_100850.3 → NP_563852.1  Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563852.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O04499, Q8H161, Q8LD62, Q93ZF2, Q94AY0
      UniProtKB/TrEMBL
      A0A178W6V9, A0A5S9TIA3, A0A654F6F1
      Conserved Domains (1) summary
      PLN02538
      Location:1 → 555
      PLN02538; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O04499.3

    Gene LinkOut

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