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    NF-YA10 nuclear factor Y, subunit A10 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 830539, updated on 18-Sep-2024

    Summary

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    Official Symbol
    NF-YA10
    Official Full Name
    nuclear factor Y, subunit A10
    Primary source
    TAIR:AT5G06510
    Locus tag
    AT5G06510
    See related
    Araport:AT5G06510
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ''nuclear factor Y; F15M7.4; F15M7_4; nuclear factor Y; subunit A10; subunit A10''
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    Genomic context

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    See NF-YA10 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (1984823..1987064)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene AGAMOUS-like 96 Neighboring gene SWAP (Suppressor-of-White-APricot)/surp domain-containing protein Neighboring gene ABC-2 type transporter family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Zhang M, et al. Sci Rep, 2017 May 3. PMID 28469131, Free PMC Article
    2. Studies on differential nuclear translocation mechanism and assembly of the three subunits of the Arabidopsis thaliana transcription factor NF-Y. Hackenberg D, et al. Mol Plant, 2012 Jul. PMID 22199235
    3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
    4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    5. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342883.1
    NM_120734.4
    NM_203012.1
    NM_203013.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA-templated transcription ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of CCAAT-binding factor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    nuclear factor Y, subunit A10
    NP_196269.1
    • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_974741.1
    • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_974742.1
    • ''nuclear factor Y, subunit A10'' (NF-YA10); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus; EXPRESSED IN: stem, vascular tissue, embryo, leaf whorl, seed; EXPRESSED DURING: F mature embryo stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A2 (TAIR:AT3G05690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      1984823..1987064
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342881.1 → NP_001330575.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFU0, Q9FG19
      UniProtKB/TrEMBL
      A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
      Conserved Domains (1) summary
      smart00521
      Location:132 → 189
      CBF; CCAAT-Binding transcription Factor

    2. NM_001342882.1 → NP_001330576.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFU0, Q9FG19
      UniProtKB/TrEMBL
      A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
      Conserved Domains (1) summary
      smart00521
      Location:132 → 189
      CBF; CCAAT-Binding transcription Factor

    3. NM_001342880.1 → NP_001330574.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQ75, A0A1P8BB86, A0A384L198

    4. NM_120734.4 → NP_196269.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_196269.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFU0, Q9FG19
      UniProtKB/TrEMBL
      A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
      Conserved Domains (1) summary
      smart00521
      Location:132 → 189
      CBF; CCAAT-Binding transcription Factor

    5. NM_203013.3 → NP_974742.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974742.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K3V7
      Conserved Domains (1) summary
      smart00521
      Location:83 → 140
      CBF; CCAAT-Binding transcription Factor

    6. NM_203012.1 → NP_974741.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_974741.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LFU0, Q9FG19
      UniProtKB/TrEMBL
      A0A178URE3, A0A5S9Y2S4, A0A7G2F8T7
      Conserved Domains (1) summary
      smart00521
      Location:132 → 189
      CBF; CCAAT-Binding transcription Factor

    7. NM_001342883.1 → NP_001330577.1  nuclear factor Y, subunit A10 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UQ75, A0A1P8BB86, A0A384L198
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LFU0.2

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