U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Eukaryotic translation initiation factor 2B (eIF-2B) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 841828, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Full Name
    Eukaryotic translation initiation factor 2B (eIF-2B) family protein
    Primary source
    TAIR:AT1G53900
    Locus tag
    AT1G53900
    See related
    Araport:AT1G53900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T18A20.13
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 1
    Exon count:
    7
    Sequence:
    Chromosome: 1; NC_003070.9 (20127545..20131050)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene LURP-one-like protein (DUF567) Neighboring gene linoleate 9S-lipoxygenase-4 protein, putative (DUF581) Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Toward an interaction map of the two-component signaling pathway of Arabidopsis thaliana. Dortay H, et al. J Proteome Res, 2008 Sep. PMID 18642946
    2. Capturing the phosphorylation and protein interaction landscape of the plant TOR kinase. Van Leene J, et al. Nat Plants, 2019 Mar. PMID 30833711
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_104268.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    Eukaryotic translation initiation factor 2B (eIF-2B) family protein
    NP_564646.3
    • Eukaryotic translation initiation factor 2B (eIF-2B) family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649), Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53880.1); Has 4724 Blast hits to 4722 proteins in 1045 species: Archae - 373; Bacteria - 1754; Metazoa - 521; Fungi - 487; Plants - 467; Viruses - 0; Other Eukaryotes - 1122 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      20127545..20131050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001333619.1 → NP_001322173.1  Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT59, A0A7G2DXR9

    2. NM_001333620.1 → NP_001322172.1  Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AT54, A0A7G2DXR9

    3. NM_104268.5 → NP_564646.3  Eukaryotic translation initiation factor 2B (eIF-2B) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_564646.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2DXR9, F4HTE6
      Conserved Domains (3) summary
      COG1184
      Location:311 → 580
      GCD2; Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
      pfam01008
      Location:311 → 568
      IF-2B; Initiation factor 2 subunit family
      pfam04525
      Location:22 → 187
      LOR; LURP-one-related
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.