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    RBCS3B Ribulose bisphosphate carboxylase (small chain) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833828, updated on 18-Sep-2024

    Summary

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    Official Symbol
    RBCS3B
    Official Full Name
    Ribulose bisphosphate carboxylase (small chain) family protein
    Primary source
    TAIR:AT5G38410
    Locus tag
    AT5G38410
    See related
    Araport:AT5G38410
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MXI10.13; MXI10_13; Rubisco small subunit 3B
    Summary
    Encodes a member of the Rubisco small subunit (RBCS) multigene family: RBCS1A (At1g67090), RBCS1B (At5g38430), RBCS2B (At5g38420), and RBCS3B (At5g38410). Functions to yield sufficient Rubisco content for leaf photosynthetic capacity.
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    Genomic context

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    See RBCS3B in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (15376988..15378642, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Ribulose bisphosphate carboxylase (small chain) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity. Izumi M, et al. J Exp Bot, 2012 Mar. PMID 22223809, Free PMC Article
    2. AtCHIP functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. Luo J, et al. Plant J, 2006 May. PMID 16640601
    3. Cosuppression of RBCS3B in Arabidopsis leads to severe photoinhibition caused by ROS accumulation. Zhan GM, et al. Plant Cell Rep, 2014 Jul. PMID 24682522
    4. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
    5. Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Boudart G, et al. Proteomics, 2005 Jan. PMID 15593128

    See all (21) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RBCS1A and RBCS3B contribute to accumulation of Rubisco in Arabidopsis leaves and that these genes work additively to yield sufficient Rubisco for photosynthetic capacity.
      Title: RBCS1A and RBCS3B, two major members within the Arabidopsis RBCS multigene family, function to yield sufficient Rubisco content for leaf photosynthetic capacity.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    NM_001036904.1
    NM_001125859.2
    NM_123202.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within photosynthesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within ribulose bisphosphate carboxylase complex assembly IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast HDA PubMed 
    located_in chloroplast HDA PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in chloroplast envelope HDA PubMed 
    located_in chloroplast stroma HDA PubMed 
    located_in cytosolic ribosome HDA PubMed 
    located_in plant-type cell wall HDA PubMed 
    located_in plastid HDA PubMed 
    located_in thylakoid HDA PubMed 

    General protein information

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    Preferred Names
    Ribulose bisphosphate carboxylase (small chain) family protein
    NP_001031981.1
    • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1997 Blast hits to 1974 proteins in 459 species: Archae - 0; Bacteria - 424; Metazoa - 0; Fungi - 0; Plants - 974; Viruses - 0; Other Eukaryotes - 599 (source: NCBI BLink).
    NP_001119331.1
    • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: thylakoid, chloroplast ribulose bisphosphate carboxylase complex, apoplast, chloroplast, membrane; EXPRESSED IN: 12 plant structures; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    NP_198657.1
    • Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 8 components; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38430.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      15376988..15378642 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001125859.2 → NP_001119331.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001119331.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y907, A0A5S9Y931, A0A654G618, A0A7G2FEU3, B3H5S2
      Conserved Domains (1) summary
      PLN02289
      Location:1 → 181
      PLN02289; ribulose-bisphosphate carboxylase small chain

    2. NM_123202.4 → NP_198657.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198657.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      P10798, Q9FF21
      UniProtKB/TrEMBL
      A0A178URY8, A0A5S9Y907, A0A654G618, A0A7G2FEU3
      Conserved Domains (1) summary
      PLN02289
      Location:1 → 176
      PLN02289; ribulose-bisphosphate carboxylase small chain

    3. NM_001036904.1 → NP_001031981.1  Ribulose bisphosphate carboxylase (small chain) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031981.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9Y907, A0A654G618, A0A7G2FEU3, F4KA76
      Conserved Domains (3) summary
      PLN02289
      Location:1 → 169
      PLN02289; ribulose-bisphosphate carboxylase small chain
      pfam00101
      Location:67 → 168
      RuBisCO_small; Ribulose bisphosphate carboxylase, small chain
      pfam12338
      Location:2 → 42
      RbcS; Ribulose-1,5-bisphosphate carboxylase small subunit
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P10798.2

    Gene LinkOut

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