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    LYM3 Peptidoglycan-binding LysM domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844098, updated on 18-Sep-2024

    Summary

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    Official Symbol
    LYM3
    Official Full Name
    Peptidoglycan-binding LysM domain-containing protein
    Primary source
    TAIR:AT1G77630
    Locus tag
    AT1G77630
    See related
    Araport:AT1G77630
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    LYP3; lysin-motif (LysM) domain protein 3; LysM-containing receptor protein 3; T5M16.22; T5M16_22
    Summary
    Encodes a lysin-motif protein mediating bacterial peptidoglycan sensing and immunity to bacterial infection. Induction of chitin-responsive genes by chitin treatment is not blocked in the mutant.
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    Genomic context

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    See LYM3 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (29173409..29175629)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene EamA-like transporter family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene ncRNA Neighboring gene Integrase-type DNA-binding superfamily protein Neighboring gene F-box associated ubiquitination effector family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection. Willmann R, et al. Proc Natl Acad Sci U S A, 2011 Dec 6. PMID 22106285, Free PMC Article
    2. Proteomic analysis of glycosylphosphatidylinositol-anchored membrane proteins. Elortza F, et al. Mol Cell Proteomics, 2003 Dec. PMID 14517339
    3. Identification of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A proteomic and genomic analysis. Borner GH, et al. Plant Physiol, 2003 Jun. PMID 12805588, Free PMC Article
    4. Prediction of glycosylphosphatidylinositol-anchored proteins in Arabidopsis. A genomic analysis. Borner GH, et al. Plant Physiol, 2002 Jun. PMID 12068095, Free PMC Article
    5. A high content in lipid-modified peripheral proteins and integral receptor kinases features in the arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2007 Nov. PMID 17644812

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106411.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables peptidoglycan binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within immune response IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane TAS
    Traceable Author Statement
    more info
    		 PubMed 
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Peptidoglycan-binding LysM domain-containing protein
    NP_177886.2
    • Peptidoglycan-binding LysM domain-containing protein; INVOLVED IN: cell wall macromolecule catabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidoglycan-binding lysin domain (InterPro:IPR018392), Peptidoglycan-binding Lysin subgroup (InterPro:IPR002482); BEST Arabidopsis thaliana protein match is: lysm domain GPI-anchored protein 1 precursor (TAIR:AT1G21880.2); Has 505 Blast hits to 496 proteins in 62 species: Archae - 0; Bacteria - 70; Metazoa - 4; Fungi - 2; Plants - 415; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29173409..29175629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106411.4 → NP_177886.2  Peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177886.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q6NPN4, Q9CAP5
      UniProtKB/TrEMBL
      A0A5S9WV78
      Conserved Domains (1) summary
      pfam01476
      Location:175 → 217
      LysM; LysM domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6NPN4.1

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