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    FBD, F-box and Leucine Rich Repeat domains containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 817227, updated on 18-Sep-2024

    Summary

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    Official Full Name
    FBD, F-box and Leucine Rich Repeat domains containing protein
    Primary source
    TAIR:AT2G26860
    Locus tag
    AT2G26860
    See related
    Araport:AT2G26860
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F12C20.10; F12C20_10
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    Genomic context

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    Location:
    chromosome: 2
    Exon count:
    4
    Sequence:
    Chromosome: 2; NC_003071.7 (11451950..11453947, complement)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Protein kinase superfamily protein Neighboring gene MutS2 Neighboring gene F-box family protein Neighboring gene uncharacterized protein Neighboring gene non-specific phospholipase C2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001336095.1
    NM_128243.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    FBD, F-box and Leucine Rich Repeat domains containing protein
    NP_001318294.1
    • FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G60610.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    NP_180254.1
    • FBD, F-box and Leucine Rich Repeat domains containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G60610.1); Has 2064 Blast hits to 2029 proteins in 30 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 0; Plants - 2026; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      11451950..11453947 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_128243.5 → NP_180254.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_180254.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81021, Q1PEZ7, Q84X02, Q84X03
      UniProtKB/TrEMBL
      A0A178W0R7, A0A5S9X1T1
      Conserved Domains (4) summary
      sd00032
      Location:134 → 156
      LRR_2; leucine-rich repeat [structural motif]
      pfam00646
      Location:2 → 46
      F-box; F-box domain
      pfam07723
      Location:156 → 181
      LRR_2; Leucine Rich Repeat
      pfam08387
      Location:351 → 396
      FBD; FBD

    2. NM_001336095.1 → NP_001318294.1  FBD, F-box and Leucine Rich Repeat domains containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O81021, Q1PEZ7, Q84X02, Q84X03
      UniProtKB/TrEMBL
      A0A178W0R7, A0A5S9X1T1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84X02.2

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