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    DGR1 choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844364, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DGR1
    Official Full Name
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    Primary source
    TAIR:AT1G80240
    Locus tag
    AT1G80240
    See related
    Araport:AT1G80240
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DUF642 L-GalL responsive gene 1; F18B13.30; F18B13_30
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    Genomic context

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    See DGR1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (30171357..30173109, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF1644) Neighboring gene Rubredoxin-like superfamily protein Neighboring gene tRNA-Trp Neighboring gene Spc97 / Spc98 family of spindle pole body (SBP) component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of two L-Galactono-1,4-lactone-responsive genes with complementary expression during the development of Arabidopsis thaliana. Gao Y, et al. Plant Cell Physiol, 2012 Mar. PMID 22323769
    2. Arabidopsis cell wall proteome defined using multidimensional protein identification technology. Bayer EM, et al. Proteomics, 2006 Jan. PMID 16287169
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. It is postulated that the DGR proteins act in the synthesis or assembly of the cell wall, influence the cell wall's extension and consequently influence cell growth. [DGR1]
      Title: Analysis of two L-Galactono-1,4-lactone-responsive genes with complementary expression during the development of Arabidopsis thaliana.
    Submit: New GeneRIF Correction

    General gene information

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    NM_106673.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642)
    NP_178141.1
    • Protein of unknown function, DUF642; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT5G25460.1); Has 387 Blast hits to 327 proteins in 22 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 381; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      30171357..30173109 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106673.5 → NP_178141.1  choice-of-anchor C domain protein, putative (Protein of unknown function, DUF642) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178141.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SSB7
      UniProtKB/TrEMBL
      A0A178WD80, A0A5S9WVZ8
      Conserved Domains (1) summary
      PLN03089
      Location:1 → 370
      PLN03089; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SSB7.1

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