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    DIM1A Ribosomal RNA adenine dimethylase family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 819355, updated on 18-Sep-2024

    Summary

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    Official Symbol
    DIM1A
    Official Full Name
    Ribosomal RNA adenine dimethylase family protein
    Primary source
    TAIR:AT2G47420
    Locus tag
    AT2G47420
    See related
    Araport:AT2G47420
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    adenosine dimethyl transferase 1A; T30B22.28
    Summary
    Encodes a putative rRNA dimethyltransferase.
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    Genomic context

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    See DIM1A in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Sequence:
    Chromosome: 2; NC_003071.7 (19457374..19458924)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene CP12 domain-containing protein 1 Neighboring gene WD40 domain-containing protein Neighboring gene Signal transduction histidine kinase Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis. Richter U, et al. Plant J, 2010 Feb. PMID 19929881, Free PMC Article
    2. Nuclear ribosome biogenesis mediated by the DIM1A rRNA dimethylase is required for organized root growth and epidermal patterning in Arabidopsis. Wieckowski Y, et al. Plant Cell, 2012 Jul. PMID 22829145, Free PMC Article
    3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_130310.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables rRNA (adenine-N6,N6-)-dimethyltransferase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within cell fate specification IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Ribosomal RNA adenine dimethylase family protein
    NP_182264.1
    • Ribosomal RNA adenine dimethylase family protein; FUNCTIONS IN: rRNA methyltransferase activity, rRNA (adenine-N6,N6-)-dimethyltransferase activity, rRNA (adenine) methyltransferase activity; INVOLVED IN: rRNA modification, rRNA processing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal RNA adenine methylase transferase, N-terminal (InterPro:IPR020598), Ribosomal RNA adenine dimethylase (InterPro:IPR011530), Ribosomal RNA adenine methylase transferase, conserved site (InterPro:IPR020596), Ribosomal RNA adenine methylase transferase (InterPro:IPR001737); BEST Arabidopsis thaliana protein match is: Ribosomal RNA adenine dimethylase family protein (TAIR:AT5G66360.2); Has 9871 Blast hits to 9860 proteins in 3038 species: Archae - 214; Bacteria - 6519; Metazoa - 271; Fungi - 146; Plants - 120; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      19457374..19458924
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_130310.3 → NP_182264.1  Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_182264.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O22268
      UniProtKB/TrEMBL
      A0A178VWJ8, A0A5S9X819
      Conserved Domains (1) summary
      PTZ00338
      Location:23 → 353
      PTZ00338; dimethyladenosine transferase-like protein; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O22268.1

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