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    Integral membrane Yip1 family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 829149, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Integral membrane Yip1 family protein
    Primary source
    TAIR:AT4G30260
    Locus tag
    AT4G30260
    See related
    Araport:AT4G30260
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9N11.110; F9N11_110; YIP4b; YPT/RAB GTPase Interacting Protein 4b
    Summary
    Encodes one of the two YPT/RAB GTPase Interacting Protein 4a (YIP4a) and YIP4b (formerly YIP2), which form a TGN-localized complex with ECHIDNA (ECH). This complex is required for the secretion of cell wall polysaccharides.
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (14816575..14819084, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Syntaxin/t-SNARE family protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 24 Neighboring gene xyloglucan endotransglucosylase/hydrolase 18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Rho-of-plant activated root hair formation requires Arabidopsis YIP4a/b gene function. Gendre D, et al. Development, 2019 Mar 11. PMID 30770391, Free PMC Article
    2. Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis. Gendre D, et al. Plant Cell, 2013 Jul. PMID 23832588, Free PMC Article
    3. Label-free protein quantification for plant Golgi protein localization and abundance. Nikolovski N, et al. Plant Physiol, 2014 Oct. PMID 25122472, Free PMC Article
    4. Identification of new intrinsic proteins in Arabidopsis plasma membrane proteome. Marmagne A, et al. Mol Cell Proteomics, 2004 Jul. PMID 15060130
    5. Isolation and proteomic characterization of the Arabidopsis Golgi defines functional and novel components involved in plant cell wall biosynthesis. Parsons HT, et al. Plant Physiol, 2012 May. PMID 22430844, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Data indicate that YIP4a (AT2G18840)/YIP4b (At4g30260)/ECH (ECHIDNA; At1g09330) complex is required for cell wall polysaccharide secretion.
      Title: Trans-Golgi network localized ECHIDNA/Ypt interacting protein complex is required for the secretion of cell wall polysaccharides in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001342003.1
    NM_001342004.1
    NM_119172.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in pectin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant organ development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in plant-type cell wall cellulose biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within polysaccharide transport IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in regulation of protein transport IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in root hair initiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in unidimensional cell growth IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi apparatus HDA PubMed 
    located_in endosome HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in trans-Golgi network HDA PubMed 
    located_in trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in trans-Golgi network membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Integral membrane Yip1 family protein
    NP_001320089.1
    • Integral membrane Yip1 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana protein match is: Integral membrane Yip1 family protein (TAIR:AT2G18840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      14816575..14819084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001342003.1 → NP_001320089.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3Z0, Q93VH1
      UniProtKB/TrEMBL
      A0A384KLW9
      Conserved Domains (1) summary
      cl21557
      Location:85 → 277
      Yip1; Yip1 domain

    2. NM_001342004.1 → NP_001328958.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9SUL8
      Conserved Domains (1) summary
      cl21557
      Location:160 → 352
      Yip1; Yip1 domain

    3. NM_119172.4 → NP_567843.1  Integral membrane Yip1 family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_567843.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A178V3Z0, Q93VH1
      UniProtKB/TrEMBL
      A0A384KLW9
      Conserved Domains (1) summary
      cl21557
      Location:85 → 277
      Yip1; Yip1 domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q93VH1.1

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