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    SYP71 syntaxin of plants 71 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 820132, updated on 18-Sep-2024

    Summary

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    Official Symbol
    SYP71
    Official Full Name
    syntaxin of plants 71
    Primary source
    TAIR:AT3G09740
    Locus tag
    AT3G09740
    See related
    Araport:AT3G09740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSYP71; syntaxin of plants 71
    Summary
    syntaxin of plants 71 (SYP71)
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    Genomic context

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    See SYP71 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    9
    Sequence:
    Chromosome: 3; NC_003074.8 (2989356..2991664)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene IQ-domain 1 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene POLAR LOCALIZATION DURING ASYMMETRIC DIVISION AND protein Neighboring gene S1FA-like DNA-binding protein Neighboring gene Galactose oxidase/kelch repeat superfamily protein Neighboring gene RING/U-box superfamily protein Neighboring gene RING/U-box superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SYP71, a plant-specific Qc-SNARE protein, reveals dual localization to the plasma membrane and the endoplasmic reticulum in Arabidopsis. Suwastika IN, et al. Cell Struct Funct, 2008. PMID 18827404
    2. The SNARE protein Syp71 is essential for turnip mosaic virus infection by mediating fusion of virus-induced vesicles with chloroplasts. Wei T, et al. PLoS Pathog, 2013. PMID 23696741, Free PMC Article
    3. Selective targeting of plasma membrane and tonoplast traffic by inhibitory (dominant-negative) SNARE fragments. Tyrrell M, et al. Plant J, 2007 Sep. PMID 17662029
    4. SNARE complexes of different composition jointly mediate membrane fusion in Arabidopsis cytokinesis. El Kasmi F, et al. Mol Biol Cell, 2013 May. PMID 23515225, Free PMC Article
    5. The Arabidopsis genome. An abundance of soluble N-ethylmaleimide-sensitive factor adaptor protein receptors. Sanderfoot AA, et al. Plant Physiol, 2000 Dec. PMID 11115874, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Syp71 is a host factor essential for successful virus infection by mediating the fusion of the virus-induced vesicles with chloroplasts during TuMV infection.
      Title: The SNARE protein Syp71 is essential for turnip mosaic virus infection by mediating fusion of virus-induced vesicles with chloroplasts.
    2. SYP71 is localized to the plasma membrane and to the endoplasmic reticulum in the dividing cells of various types of tissues.
      Title: SYP71, a plant-specific Qc-SNARE protein, reveals dual localization to the plasma membrane and the endoplasmic reticulum in Arabidopsis.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_111809.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within intracellular protein transport TAS
    Traceable Author Statement
    more info
    		 PubMed 
    acts_upstream_of_or_within protein targeting to membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell plate IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytosol HDA PubMed 
    located_in endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plasma membrane HDA PubMed 
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasmodesma HDA PubMed 

    General protein information

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    Preferred Names
    syntaxin of plants 71
    NP_566354.1
    • syntaxin of plants 71 (SYP71); FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, protein targeting to membrane; LOCATED IN: integral to membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Syntaxin/epimorphin, conserved site (InterPro:IPR006012); BEST Arabidopsis thaliana protein match is: syntaxin of plants 72 (TAIR:AT3G45280.1); Has 541 Blast hits to 539 proteins in 136 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 116; Plants - 188; Viruses - 0; Other Eukaryotes - 105 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      2989356..2991664
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_111809.5 → NP_566354.1  syntaxin of plants 71 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566354.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SF29
      UniProtKB/TrEMBL
      A0A178VCY7, A0A384KWM4, Q2HIU8
      Conserved Domains (2) summary
      cd15841
      Location:177 → 232
      SNARE_Qc; SNARE motif, subgroup Qc
      pfam05739
      Location:208 → 258
      SNARE; SNARE domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9SF29.1

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