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    Homeodomain-like/winged-helix DNA-binding family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 843606, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Homeodomain-like/winged-helix DNA-binding family protein
    Primary source
    TAIR:AT1G72740
    Locus tag
    AT1G72740
    See related
    Araport:AT1G72740
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F28P22.7; F28P22_7
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    6
    Sequence:
    Chromosome: 1; NC_003070.9 (27380260..27382924, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene casein kinase 1-like protein 2 Neighboring gene hypothetical protein (DUF3511) Neighboring gene DEA(D/H)-box RNA helicase family protein Neighboring gene uncharacterized protein Neighboring gene translocase inner membrane subunit 23-2 Neighboring gene Protein kinase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    2. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    3. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
    4. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_001084345.2
    NM_105933.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables double-stranded telomeric DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in nucleosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of nucleosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Homeodomain-like/winged-helix DNA-binding family protein
    NP_001077814.1
    • Homeodomain-like/winged-helix DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: nucleosome assembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G17520.1); Has 855 Blast hits to 841 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 100; Fungi - 63; Plants - 637; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
    NP_177418.2
    • Homeodomain-like/winged-helix DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: nucleosome assembly, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Histone H1/H5 (InterPro:IPR005818), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein (TAIR:AT1G17520.1); Has 801 Blast hits to 789 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 83; Fungi - 63; Plants - 602; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      27380260..27382924 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001084345.2 → NP_001077814.1  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001077814.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WDM5, A0A654ENE7, F4IEY3
      Conserved Domains (2) summary
      smart00526
      Location:117 → 181
      H15; Domain in histone families 1 and 5
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

    2. NM_105933.3 → NP_177418.2  Homeodomain-like/winged-helix DNA-binding family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177418.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4IEY4, Q94JU9, Q9CAI8
      UniProtKB/TrEMBL
      A0A5S9WTT2, A0A654ENE7
      Conserved Domains (2) summary
      smart00526
      Location:117 → 180
      H15; Domain in histone families 1 and 5
      cd11660
      Location:7 → 56
      SANT_TRF; Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4IEY4.1

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