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    CIP4 COP1-interacting protein 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 833693, updated on 18-Sep-2024

    Summary

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    Official Symbol
    CIP4
    Official Full Name
    COP1-interacting protein 4
    Primary source
    TAIR:AT5G37190
    Locus tag
    AT5G37190
    See related
    Araport:AT5G37190
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    COP1-interacting protein 4; MJG14.24; MJG14_24
    Summary
    COP1-interacting protein 4, a nuclear-localized positive regulator of arabidopsis photomorphogenesis
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    Genomic context

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    See CIP4 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    8
    Sequence:
    Chromosome: 5; NC_003076.8 (14723144..14726818, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene sucrose synthase 5 Neighboring gene RING/U-box superfamily protein Neighboring gene Cysteine/Histidine-rich C1 domain family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cip4, a new COP1 target, is a nucleus-localized positive regulator of Arabidopsis photomorphogenesis. Yamamoto YY, et al. Plant Cell, 2001 Feb. PMID 11226193, Free PMC Article
    2. COI1 links jasmonate signalling and fertility to the SCF ubiquitin-ligase complex in Arabidopsis. Devoto A, et al. Plant J, 2002 Nov. PMID 12445118
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    NM_001344168.1
    NM_001344169.1
    NM_123078.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables transcription coregulator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of photomorphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    COP1-interacting protein 4
    NP_568546.1
    • COP1-interacting protein 4 (CIP4); FUNCTIONS IN: transcription cofactor activity; INVOLVED IN: regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: COP1-interacting protein 4.1 (TAIR:AT4G00930.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      14723144..14726818 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_123078.3 → NP_568546.1  COP1-interacting protein 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_568546.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654G5W0, Q9FHU3

    2. NM_001344168.1 → NP_001331331.1  COP1-interacting protein 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDL0, A0A654G5W0

    3. NM_001344169.1 → NP_001331332.1  COP1-interacting protein 4 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BDM3, A0A654G5W0
    Nucleotide Protein
    Heading Accession and Version

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