U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    SERK5 somatic embryogenesis receptor-like kinase 5 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 815863, updated on 18-Sep-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SERK5
    Official Full Name
    somatic embryogenesis receptor-like kinase 5
    Primary source
    TAIR:AT2G13800
    Locus tag
    AT2G13800
    See related
    Araport:AT2G13800
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ATSERK5; BAK8; BRI1- ASSOCIATED KINASE 8; F13J11.15; F13J11_15; SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5; somatic embryogenesis receptor-like kinase 5
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SERK5 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    11
    Sequence:
    Chromosome: 2; NC_003071.7 (5753103..5757353)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclease Neighboring gene somatic embryogenesis receptor-like kinase 4 Neighboring gene AGD2-like defense response protein 1 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Hecht V, et al. Plant Physiol, 2001 Nov. PMID 11706164, Free PMC Article
    2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
    3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
    4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
    5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help
    NM_001335399.1
    NM_001335401.1

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transmembrane receptor protein serine/threonine kinase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within protein phosphorylation ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  
    located_in mitochondrion HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    somatic embryogenesis receptor-like kinase 5
    NP_001318220.1
    • somatic embryogenesis receptor-like kinase 5 (SERK5); FUNCTIONS IN: protein kinase activity, transmembrane receptor protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 4 (TAIR:AT2G13790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      5753103..5757353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001335400.1 → NP_001324219.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZF0

    2. NM_126956.4 → NP_179000.3  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_179000.3

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0LGK2, Q8LPS5, Q9SKG4
      UniProtKB/TrEMBL
      A0A178VYV7
      Conserved Domains (5) summary
      smart00221
      Location:280 → 549
      STYKc; Protein kinase; unclassified specificity
      sd00033
      Location:72 → 95
      LRR_RI; leucine-rich repeat [structural motif]
      pfam08263
      Location:26 → 67
      LRRNT_2; Leucine rich repeat N-terminal domain
      pfam13855
      Location:71 → 130
      LRR_8; Leucine rich repeat
      cl21453
      Location:281 → 552
      PKc_like; Protein Kinases, catalytic domain

    3. NM_001335399.1 → NP_001318220.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      C0LGK2, Q8LPS5, Q9SKG4
      UniProtKB/TrEMBL
      A0A178VYV7

    4. NM_001335401.1 → NP_001324220.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AZF0
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8LPS5.2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools