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    protease-associated (PA) domain-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 826236, updated on 18-Sep-2024

    Summary

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    Official Full Name
    protease-associated (PA) domain-containing protein
    Primary source
    TAIR:AT4G07670
    Locus tag
    AT4G07670
    See related
    Araport:AT4G07670
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F10A2.10; F10A2_10
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    4
    Sequence:
    Chromosome: 4; NC_003075.7 (4462911..4464347)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    2. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by TAIR

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    protease-associated (PA) domain-containing protein
    NP_001190685.1
    • protease-associated (PA) domain-containing protein; FUNCTIONS IN: peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase M28 (InterPro:IPR007484); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT5G19740.1).
    NP_192510.1
    • protease-associated (PA) domain-containing protein; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137); BEST Arabidopsis thaliana protein match is: Peptidase M28 family protein (TAIR:AT5G19740.1); Has 1547 Blast hits to 1542 proteins in 265 species: Archae - 2; Bacteria - 277; Metazoa - 551; Fungi - 328; Plants - 113; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      4462911..4464347
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001203756.1 → NP_001190685.1  protease-associated (PA) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190685.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FM70, F4JGJ7
      Conserved Domains (2) summary
      cl10459
      Location:1 → 123
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
      cl14876
      Location:132 → 213
      Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42

    2. NM_116840.1 → NP_192510.1  protease-associated (PA) domain-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_192510.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654FM70, Q9XH28
      Conserved Domains (2) summary
      cl10459
      Location:10 → 150
      Peptidases_S8_S53; Peptidase domain in the S8 and S53 families
      cl14876
      Location:159 → 248
      Zinc_peptidase_like; Zinc peptidases M18, M20, M28, and M42
    Nucleotide Protein
    Heading Accession and Version

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