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    TBL28 TRICHOME BIREFRINGENCE-LIKE 28 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 818606, updated on 18-Sep-2024

    Summary

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    Official Symbol
    TBL28
    Official Full Name
    TRICHOME BIREFRINGENCE-LIKE 28
    Primary source
    TAIR:AT2G40150
    Locus tag
    AT2G40150
    See related
    Araport:AT2G40150
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T7M7.4; T7M7_4; TRICHOME BIREFRINGENCE-LIKE 28
    Summary
    Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
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    Genomic context

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    See TBL28 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    5
    Sequence:
    Chromosome: 2; NC_003071.7 (16775424..16777243)

    Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein Neighboring gene zinc finger (CCCH-type) family protein Neighboring gene uncharacterized protein Neighboring gene trichome birefringence-like protein (DUF828) Neighboring gene Stress induced protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003071.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regiospecific Acetylation of Xylan is Mediated by a Group of DUF231-Containing O-Acetyltransferases. Zhong R, et al. Plant Cell Physiol, 2017 Dec 1. PMID 29059346
    2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TBL28 catalyzed xylan acetylation and is expressed in secondary wall-forming cells.
      Title: Regiospecific Acetylation of Xylan is Mediated by a Group of DUF231-Containing O-Acetyltransferases.
    Submit: New GeneRIF Correction

    General gene information

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    NM_129573.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables O-acetyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    TRICHOME BIREFRINGENCE-LIKE 28
    NP_030560.1
    • TRICHOME BIREFRINGENCE-LIKE 28 (TBL28); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1332 Blast hits to 1305 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003071.7 Reference assembly

      Range
      16775424..16777243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_129573.2 → NP_030560.1  TRICHOME BIREFRINGENCE-LIKE 28 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_030560.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q94K00, Q9XEE7
      UniProtKB/TrEMBL
      A0A178VPE7, A0A654F0H0
      Conserved Domains (2) summary
      pfam13839
      Location:124 → 419
      PC-Esterase; GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
      pfam14416
      Location:69 → 123
      PMR5N; PMR5 N terminal Domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q94K00.1

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