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    coiled-coil protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838189, updated on 18-Sep-2024

    Summary

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    Official Full Name
    coiled-coil protein
    Primary source
    TAIR:AT1G16210
    Locus tag
    AT1G16210
    See related
    Araport:AT1G16210
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F3O9.2; F3O9_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    3
    Sequence:
    Chromosome: 1; NC_003070.9 (5546099..5547753, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene ephrin-A3 protein Neighboring gene Serinc-domain containing serine and sphingolipid biosynthesis protein Neighboring gene Rad23 UV excision repair protein family Neighboring gene Protein phosphatase 2C family protein Neighboring gene Target SNARE coiled-coil domain protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_101487.5

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    coiled-coil protein
    NP_563993.1
    • unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1014 (InterPro:IPR010422); Has 16107 Blast hits to 8386 proteins in 1107 species: Archae - 26; Bacteria - 3370; Metazoa - 4013; Fungi - 1516; Plants - 526; Viruses - 120; Other Eukaryotes - 6536 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5546099..5547753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101487.5 → NP_563993.1  coiled-coil protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563993.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178WLE6, A0A654EL43, Q8VYC9
      Conserved Domains (1) summary
      pfam06244
      Location:102 → 224
      Ccdc124; Coiled-coil domain-containing protein 124
    Nucleotide Protein
    Heading Accession and Version

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