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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001289813.2 → NP_001276742.1 protein DGCR6 isoform 1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longest isoform (1).
- Source sequence(s)
-
AC087064
- Consensus CDS
-
CCDS79432.1
- UniProtKB/Swiss-Prot
- O35347, Q9D2P5
- UniProtKB/TrEMBL
-
E9QP31
- Related
- ENSMUSP00000067682.8, ENSMUST00000066027.14
- Conserved Domains (1) summary
-
- pfam07324
Location:9 → 198
- DGCR6; DiGeorge syndrome critical region 6 (DGCR6) protein
-
NM_001289814.2 → NP_001276743.1 protein DGCR6 isoform 2
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate in-frame splice site in the coding region compared to variant 1. The encoded protein (isoform 2) is shorter than isoform 1.
- Source sequence(s)
-
AC087064
- Consensus CDS
-
CCDS79433.1
- UniProtKB/Swiss-Prot
- O35347, Q9D2P5
- UniProtKB/TrEMBL
-
D3Z558
- Related
- ENSMUSP00000122572.2, ENSMUST00000151266.8
- Conserved Domains (1) summary
-
- pfam07324
Location:9 → 195
- DGCR6; DiGeorge syndrome critical region 6 (DGCR6) protein
-
NM_001416775.1 → NP_001403704.1 protein DGCR6 isoform 4
Status: REVIEWED
- Source sequence(s)
-
AC087064
-
NM_001416776.1 → NP_001403705.1 protein DGCR6 isoform 5
Status: REVIEWED
- Source sequence(s)
-
AC087064
-
NM_001416778.1 → NP_001403707.1 protein DGCR6 isoform 2
Status: REVIEWED
- Source sequence(s)
-
AC087064
- UniProtKB/Swiss-Prot
- O35347, Q9D2P5
- UniProtKB/TrEMBL
-
D3Z558
-
NM_001416780.1 → NP_001403709.1 protein DGCR6 isoform 6
Status: REVIEWED
- Source sequence(s)
-
AC087064
-
NM_010047.5 → NP_034177.1 protein DGCR6 isoform 3
See identical proteins and their annotated locations for NP_034177.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) represents the use of an alternate promoter and has multiple differences compared to variant 1. These differences result in a different 5' UTR and cause translation initiation at an alternate start codon compared to variant 1. The encoded isoform (3) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AC087064
- Consensus CDS
-
CCDS28016.1
- UniProtKB/TrEMBL
- Q3TV71, Q80ZS8
- Related
- ENSMUSP00000123029.2, ENSMUST00000143343.8
- Conserved Domains (1) summary
-
- pfam07324
Location:9 → 167
- DGCR6; DiGeorge syndrome critical region 6 (DGCR6) protein
RNA
-
NR_110380.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) uses two alternate splice sites compared to variant 1. This variant is represented as non-coding because the use of the 5'-most supported translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
AC087064
-
NR_184393.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087064
-
NR_184394.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087064
-
NR_184395.1 RNA Sequence
Status: REVIEWED
- Source sequence(s)
-
AC087064
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000082.7 Reference GRCm39 C57BL/6J
- Range
-
17870736..17889497
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_036159766.1 → XP_036015659.1 protein DGCR6 isoform X1
- UniProtKB/Swiss-Prot
- O35347, Q9D2P5
- UniProtKB/TrEMBL
-
D3Z558
- Conserved Domains (1) summary
-
- pfam07324
Location:9 → 195
- DGCR6; DiGeorge syndrome critical region 6 (DGCR6) protein