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    Fhip2a FHF complex subunit HOOK interacting protein 2A [ Mus musculus (house mouse) ]

    Gene ID: 226252, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Fhip2aprovided by MGI
    Official Full Name
    FHF complex subunit HOOK interacting protein 2Aprovided by MGI
    Primary source
    MGI:MGI:2147545
    See related
    Ensembl:ENSMUSG00000033478 AllianceGenome:MGI:2147545
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Fam160b1; mKIAA1600
    Summary
    Orthologous to human FHIP2A (FHF complex subunit HOOK interacting protein 2A). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in thymus adult (RPKM 9.1), limb E14.5 (RPKM 8.6) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Fhip2a in Genome Data Viewer
    Location:
    19 D2; 19 52.22 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (57349355..57378026)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (57360923..57389594)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene actin-binding LIM protein 1 Neighboring gene RIKEN cDNA 4930449E18 gene Neighboring gene RIKEN cDNA B230217O12 gene Neighboring gene predicted gene, 50270 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:57430022-57430395 Neighboring gene RIKEN cDNA 2600017C09 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:57486570-57486679 Neighboring gene CapStarr-seq enhancer MGSCv37_chr19:57506098-57506303 Neighboring gene predicted gene, 41874 Neighboring gene TruB pseudouridine (psi) synthase family member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Feb 28. PMID 12693553
    2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    3. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article
    4. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    5. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    FHF complex subunit HOOK interacting protein 2A
    Names
    family with sequence similarity 160, member B1
    protein FAM160B1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145505.4 → NP_663480.3  FHF complex subunit HOOK interacting protein 2A

      See identical proteins and their annotated locations for NP_663480.3

      Status: VALIDATED

      Source sequence(s)
      AK029835, AK122530, BC059019, BU056108
      Consensus CDS
      CCDS29925.1
      UniProtKB/Swiss-Prot
      Q3T9P9, Q68FM8, Q6P5D5, Q80TB5, Q8C8M2, Q8CDM8, Q8R1V3
      UniProtKB/TrEMBL
      A0AA74KTG1
      Related
      ENSMUSP00000048903.5, ENSMUST00000036407.6
      Conserved Domains (1) summary
      pfam10257
      Location:78 → 495
      RAI16-like; Retinoic acid induced 16-like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      57349355..57378026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250920.2 → XP_030106780.1  FHF complex subunit HOOK interacting protein 2A isoform X1

      Conserved Domains (1) summary
      pfam10257
      Location:6 → 182
      RAI16-like; Retinoic acid induced 16-like protein

    RNA

    1. XR_001782586.2 RNA Sequence

      Related
      ENSMUST00000237170.2
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CDM8.2 GenPept UniProtKB/Swiss-Prot:Q8CDM8

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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