U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    nirL heme d1 biosynthesis protein NirL [ Pseudomonas aeruginosa PAO1 ]

    Gene ID: 879762, updated on 11-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    nirL
    Gene description
    heme d1 biosynthesis protein NirL
    Locus tag
    PA0514
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pseudomonas aeruginosa PAO1 (strain: PAO1)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_002516.2 (575516..576040, complement)

    NC_002516.2Genomic Context describing neighboring genes Neighboring gene cytochrome C Neighboring gene uroporphyrin-III C-methyltransferase Neighboring gene heme d1 biosynthesis protein NirJ Neighboring gene heme d1 biosynthesis protein NirH Neighboring gene heme d1 biosynthesis protein NirG Neighboring gene heme d1 biosynthesis protein NirD Neighboring gene heme d1 biosynthesis protein NirF Neighboring gene cytochrome c55X Neighboring gene cytochrome C-551

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_002516.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene cluster for dissimilatory nitrite reductase (nir) from Pseudomonas aeruginosa: sequencing and identification of a locus for heme d1 biosynthesis. Kawasaki S, et al. J Bacteriol, 1997 Jan. PMID 8982003, Free PMC Article
    2. Pseudomonas Genome Database: facilitating user-friendly, comprehensive comparisons of microbial genomes. Winsor GL, et al. Nucleic Acids Res, 2009 Jan. PMID 18978025, Free PMC Article
    3. Defining the Pseudomonas aeruginosa SOS response and its role in the global response to the antibiotic ciprofloxacin. Cirz RT, et al. J Bacteriol, 2006 Oct. PMID 17015649, Free PMC Article
    4. Cystic fibrosis sputum supports growth and cues key aspects of Pseudomonas aeruginosa physiology. Palmer KL, et al. J Bacteriol, 2005 Aug. PMID 16030221, Free PMC Article
    5. A cystic fibrosis epidemic strain of Pseudomonas aeruginosa displays enhanced virulence and antimicrobial resistance. Salunkhe P, et al. J Bacteriol, 2005 Jul. PMID 15995206, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by PseudoCAP

    Process Evidence Code Pubs
    acts_upstream_of_or_within heme biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    heme d1 biosynthesis protein NirL
    NP_249205.1
    • possible siroheme decarboxylase subunit

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002516.2 Reference assembly

      Range
      575516..576040 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_249205.1 heme d1 biosynthesis protein NirL [Pseudomonas aeruginosa PAO1]

      See identical proteins and their annotated locations for NP_249205.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P95413
      Conserved Domains (2) summary
      pfam17805
      Location:68 → 156
      AsnC_trans_reg2; AsnC-like ligand binding domain
      cl29894
      Location:26 → 104
      AsnC_trans_reg; Lrp/AsnC ligand binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P95413.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials