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    Zfp933l1 zinc finger protein 933 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102550729, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp933l1provided by RGD
    Official Full Name
    zinc finger protein 933provided by RGD
    Primary source
    RGD:7528461
    See related
    AllianceGenome:RGD:7528461
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 10.4), Spleen (RPKM 8.6) and 9 other tissues See more
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    Genomic context

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    See Zfp933l1 in Genome Data Viewer
    Location:
    1q55
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (270279732..270292057)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (260293716..260306040)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (282541758..282552098)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor kinase 5 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene RNA, U6 small nuclear 28 Neighboring gene zinc finger protein 950 Neighboring gene glycine cleavage system protein H like1 Neighboring gene carboxylesterase 2I

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 431-like
    Names
    zinc finger protein 120-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      270279732..270292057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039101464.2 → XP_038957392.1  zinc finger protein 431-like

      Conserved Domains (4) summary
      COG5048
      Location:101 → 261
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:161 → 181
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 44
      KRAB; KRAB box
      pfam13465
      Location:257 → 282
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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