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    Tmem45a2 transmembrane protein 45A2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360707, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tmem45a2provided by RGD
    Official Full Name
    transmembrane protein 45A2provided by RGD
    Primary source
    RGD:1310935
    See related
    EnsemblRapid:ENSRNOG00000051418 AllianceGenome:RGD:1310935
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310935
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 29.1), Uterus (RPKM 11.2) and 1 other tissue See more
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    Genomic context

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    See Tmem45a2 in Genome Data Viewer
    Location:
    11q12
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (56952176..56996145)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (43483509..43527025)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (45713345..45763174)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene translocase of outer mitochondrial membrane 70 Neighboring gene uncharacterized LOC108352328 Neighboring gene uncharacterized LOC134481039 Neighboring gene ribosomal protein L5, pseudogene 5 Neighboring gene ubiquitin-conjugating enzyme E2I, pseudogene 2 Neighboring gene leukemia NUP98 fusion partner 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC360707
    Names
    transmembrane protein 45A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408930.1 → NP_001395859.1  uncharacterized protein LOC360707

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      UniProtKB/TrEMBL
      A0A0G2JYF6
      Related
      ENSRNOP00000070636.2, ENSRNOT00000079336.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      56952176..56996145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270632.1 → XP_063126702.1  uncharacterized protein LOC360707 isoform X2

    2. XM_063270635.1 → XP_063126705.1  uncharacterized protein LOC360707 isoform X3

    3. XM_063270633.1 → XP_063126703.1  uncharacterized protein LOC360707 isoform X2

    4. XM_063270636.1 → XP_063126706.1  uncharacterized protein LOC360707 isoform X3

    5. XM_008768661.4 → XP_008766883.3  uncharacterized protein LOC360707 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JYF6

    6. XM_063270631.1 → XP_063126701.1  uncharacterized protein LOC360707 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JYF6
    Nucleotide Protein Strain
    Heading Accession and Version

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