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    Zfp839 zinc finger protein 839 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500723, updated on 9-Dec-2024

    Summary

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    Symbol
    Zfp839provided by RGD
    Full Name
    zinc finger protein 839provided by RGD
    Primary source
    RGD:1562557
    See related
    EnsemblRapid:ENSRNOG00000031661 AllianceGenome:RGD:1562557
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Znf839; RGD1562557
    Summary
    Orthologous to human ZNF839 (zinc finger protein 839). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 54.9), Thymus (RPKM 26.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp839 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (135686132..135711856)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (129865859..129885816)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (135269727..135287371)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene MOK protein kinase Neighboring gene uncharacterized LOC108351302 Neighboring gene transfer RNA isoleucine (anticodon AAU) 3 Neighboring gene cyclin-dependent kinase 2-interacting protein Neighboring gene tectonin beta-propeller repeat containing 2 Neighboring gene uncharacterized LOC134479258 Neighboring gene ankyrin repeat domain 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    zinc finger protein 839

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      135686132..135711856
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006240616.5 → XP_006240678.4  zinc finger protein 839

      UniProtKB/TrEMBL
      F1M2B6
      Related
      ENSRNOP00000051456.6, ENSRNOT00000051685.7

    RNA

    1. XR_010052378.1 RNA Sequence

    2. XR_010052380.1 RNA Sequence

    3. XR_010052384.1 RNA Sequence

    4. XR_010052381.1 RNA Sequence

    5. XR_010052379.1 RNA Sequence

    6. XR_010052383.1 RNA Sequence

    7. XR_010052382.1 RNA Sequence

    8. XR_010052385.1 RNA Sequence

    9. XR_005506337.2 RNA Sequence

    10. XR_010052386.1 RNA Sequence

    11. XR_010052387.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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