Nalf1 NALCN channel auxiliary factor 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Nalf1provided by RGD
Full Name: NALCN channel auxiliary factor 1provided by RGD
Primary source: RGD:1559498
See related: EnsemblRapid:ENSRNOG00000066120 AllianceGenome:RGD:1559498
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Tmem28; Fam155a; RGD1559498
Summary: Predicted to be located in plasma membrane. Orthologous to human NALF1 (NALCN channel auxiliary factor 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 168.7) See more
Orthologs: human mouse all
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Genomic context

Location:: 16q12.5

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	16	NC_086034.1 (86415540..86938150)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	16	NC_051351.1 (79713577..80236295)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	16	NC_005115.4 (85528126..86053447)

Chromosome 16 - NC_086034.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

NoName (e-PCR)
- UniSTS:493347

BE119293 (e-PCR)
- UniSTS:249145

BF400915 (e-PCR)
- UniSTS:245051

D16Ulb3 (e-PCR)
- UniSTS:518972

BE102083 (e-PCR)
- UniSTS:244060

D13S619 (e-PCR)
- UniSTS:148885

BF387963 (e-PCR)
- UniSTS:244476

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
contributes_to stretch-activated, monoatomic cation-selective, calcium channel activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in calcium ion import across plasma membrane	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: NALCN channel auxiliary factor 1

Names: family with sequence similarity 155, member A; transmembrane protein 28; transmembrane protein FAM155A; transmembrane protein FAM155A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.