U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Plac1 placenta enriched 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 317316, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Symbol
    Plac1provided by RGD
    Full Name
    placenta enriched 1provided by RGD
    Primary source
    RGD:1563777
    See related
    EnsemblRapid:ENSRNOG00000002379 AllianceGenome:RGD:1563777
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in placenta development. Predicted to act upstream of or within spongiotrophoblast layer developmental growth. Predicted to be located in extracellular region. Orthologous to human PLAC1 (placenta enriched 1). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Plac1 in Genome Data Viewer
    Location:
    Xq36
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (137740896..137874688, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (132821347..132955143, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (157931450..158133506)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102550366 Neighboring gene microRNA 503 Neighboring gene microRNA 322 Neighboring gene PABIR family member 2 Neighboring gene PABIR family member 3

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Plac1 (placenta-specific 1) is essential for normal placental and embryonic development. Jackman SM, et al. Mol Reprod Dev, 2012 Aug. PMID 22729990, Free PMC Article
    2. PLAC1, an Xq26 gene with placenta-specific expression. Cocchia M, et al. Genomics, 2000 Sep 15. PMID 10995572
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in placenta development ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in placenta development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within spongiotrophoblast layer developmental growth ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    placenta-specific protein 1
    Names
    placenta-specific 1
    placenta-specific protein 1-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024894.1 → NP_001020065.1  placenta-specific protein 1 precursor

      See identical proteins and their annotated locations for NP_001020065.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097979
      UniProtKB/Swiss-Prot
      Q4V7E2
      UniProtKB/TrEMBL
      A6KUJ7
      Related
      ENSRNOP00000093046.1, ENSRNOT00000114351.2
      Conserved Domains (1) summary
      cl27758
      Location:30 → 121
      Zona_pellucida; Zona pellucida-like domain

    2. NM_001434103.1 → NP_001421032.1  placenta-specific protein 1 precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000021

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      137740896..137874688 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017602056.3 → XP_017457545.1  placenta-specific protein 1 isoform X1

      UniProtKB/Swiss-Prot
      Q4V7E2
      UniProtKB/TrEMBL
      A6KUJ7
      Related
      ENSRNOP00000082384.2, ENSRNOT00000105041.2
      Conserved Domains (1) summary
      cl27758
      Location:30 → 121
      Zona_pellucida; Zona pellucida-like domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V7E2.1 GenPept UniProtKB/Swiss-Prot:Q4V7E2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools