U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zfp94 zinc finger protein 94 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499095, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    Zfp94provided by RGD
    Full Name
    zinc finger protein 94provided by RGD
    Primary source
    RGD:1560430
    See related
    EnsemblRapid:ENSRNOG00000065649 AllianceGenome:RGD:1560430
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleoplasm. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 27.3), Kidney (RPKM 26.3) and 9 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zfp94 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88986094..89007584, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79858188..79879702, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (81137495..81152458, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 108 Neighboring gene intraflagellar transport protein 81 homolog Neighboring gene zinc finger protein 61 Neighboring gene uncharacterized LOC103691053 Neighboring gene zinc finger protein 94 like 1 Neighboring gene tescalcin-like Neighboring gene Ly6/Plaur domain containing 5

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Analysis of homologous XRCC1-linked zinc-finger gene families in human and mouse: evidence for orthologous genes. Shannon M, et al. Genomics, 1998 Apr 1. PMID 9570955
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC114501

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 94

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037212.2 → NP_001032289.2  zinc finger protein 94

      See identical proteins and their annotated locations for NP_001032289.2

      Status: VALIDATED

      Source sequence(s)
      BC108299
      UniProtKB/TrEMBL
      F1M973, Q32P35
      Conserved Domains (4) summary
      COG5048
      Location:218 → 417
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:381 → 401
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:1 → 42
      KRAB; KRAB box
      pfam13465
      Location:421 → 445
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      88986094..89007584 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087102.2 → XP_038943030.1  zinc finger protein 94 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:218 → 417
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:381 → 401
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:1 → 42
      KRAB; KRAB box
      pfam13465
      Location:421 → 445
      zf-H2C2_2; Zinc-finger double domain

    2. XM_063270846.1 → XP_063126916.1  zinc finger protein 94 isoform X2

    3. XM_063270845.1 → XP_063126915.1  zinc finger protein 94 isoform X2

    4. XM_063270844.1 → XP_063126914.1  zinc finger protein 94 isoform X2

    5. XM_063270841.1 → XP_063126911.1  zinc finger protein 94 isoform X1

    6. XM_039087099.2 → XP_038943027.1  zinc finger protein 94 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:218 → 417
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:381 → 401
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:1 → 42
      KRAB; KRAB box
      pfam13465
      Location:421 → 445
      zf-H2C2_2; Zinc-finger double domain

    7. XM_063270843.1 → XP_063126913.1  zinc finger protein 94 isoform X1

    8. XM_039087095.2 → XP_038943023.2  zinc finger protein 94 isoform X1

      Related
      ENSRNOP00000026264.6, ENSRNOT00000026263.7
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.