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    LOC102555617 uncharacterized LOC102555617 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102555617, updated on 17-Aug-2024

    Summary

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    Symbol
    LOC102555617provided by RGD
    Full Name
    uncharacterized LOC102555617provided by RGD
    Primary source
    RGD:7650527
    See related
    EnsemblRapid:ENSRNOG00000081300 AllianceGenome:RGD:7650527
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 91.2) See more
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    Genomic context

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    See LOC102555617 in Genome Data Viewer
    Location:
    1q22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (123852625..123913402, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (114440731..114448803, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (121010052..121018201, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102555470 Neighboring gene uncharacterized LOC103691146 Neighboring gene uncharacterized LOC120099831 Neighboring gene microRNA mir-344b-2 Neighboring gene microRNA 344b-1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    antifreeze protein Maxi-like; transcription factor SPT20 homolog; uncharacterized protein DDB_G0271670-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      123852625..123913402 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063280952.1 → XP_063137022.1  uncharacterized protein DDB_G0271670-like isoform X3

      Related
      ENSRNOT00000157310.1

    2. XM_063280950.1 → XP_063137020.1  uncharacterized protein DDB_G0271670-like isoform X1

    3. XM_063280951.1 → XP_063137021.1  uncharacterized protein DDB_G0271670-like isoform X2

      Related
      ENSRNOT00000127685.1

    4. XM_063280954.1 → XP_063137024.1  transcription factor SPT20 homolog isoform X5

    5. XM_063280953.1 → XP_063137023.1  transcription factor SPT20 homolog isoform X4

    6. XM_063280955.1 → XP_063137025.1  antifreeze protein Maxi-like isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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