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    Outer arm dynein light chain 1 protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844159, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Outer arm dynein light chain 1 protein
    Primary source
    TAIR:AT1G78230
    Locus tag
    AT1G78230
    See related
    Araport:AT1G78230
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T11I11.17; T11I11_17
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (29430052..29432764)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene general regulatory factor 13 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene S-adenosyl-L-methionine-dependent methyltransferases superfamily protein Neighboring gene tRNA-Met

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_106473.6

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type vacuole HDA PubMed 

    General protein information

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    Preferred Names
    Outer arm dynein light chain 1 protein
    NP_177947.3
    • Outer arm dynein light chain 1 protein; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT4G03260.2); Has 24271 Blast hits to 14439 proteins in 747 species: Archae - 6; Bacteria - 9514; Metazoa - 8699; Fungi - 1002; Plants - 3127; Viruses - 44; Other Eukaryotes - 1879 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29430052..29432764
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106473.6 → NP_177947.3  Outer arm dynein light chain 1 protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_177947.3

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A654EQ09, F4IA60, Q9C9Q9
      Conserved Domains (3) summary
      cd00116
      Location:430 → 595
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:453 → 474
      LRR_1; leucine-rich repeat [structural motif]
      pfam13855
      Location:451 → 507
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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