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    Cfap97d2 CFAP97 domain containing 2 [ Mus musculus (house mouse) ]

    Gene ID: 403185, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Cfap97d2provided by MGI
    Official Full Name
    CFAP97 domain containing 2provided by MGI
    Primary source
    MGI:MGI:2685952
    See related
    Ensembl:ENSMUSG00000090336 AllianceGenome:MGI:2685952
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm1106; 4932443I19Rik; A230061C02Rik
    Summary
    Is expressed in bladder; lung; nasal septum; palatal shelf; and skeleton. Orthologous to human CFAP97D2 (CFAP97 domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Cfap97d2 in Genome Data Viewer
    Location:
    8 A1.1; 8 6.38 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (13755508..13794611)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (13705750..13744599)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 53399 Neighboring gene RIKEN cDNA 1700029H14 gene Neighboring gene STARR-seq mESC enhancer starr_20769 Neighboring gene RAS p21 protein activator 3 Neighboring gene STARR-seq mESC enhancer starr_20770 Neighboring gene STARR-positive B cell enhancer ABC_E2857 Neighboring gene predicted gene, 34795 Neighboring gene VISTA enhancer mm1751 Neighboring gene STARR-positive B cell enhancer ABC_E10490 Neighboring gene predicted gene, 46032 Neighboring gene STARR-seq mESC enhancer starr_20774 Neighboring gene STARR-seq mESC enhancer starr_20775 Neighboring gene STARR-positive B cell enhancer mm9_chr8:13753700-13754000 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene CDC16 cell division cycle 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein CFAP97D2
    Names
    CFAP97 domain-containing protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001101519.1 → NP_001094989.1  uncharacterized protein CFAP97D2

      See identical proteins and their annotated locations for NP_001094989.1

      Status: VALIDATED

      Source sequence(s)
      AK038767
      Consensus CDS
      CCDS52489.1
      UniProtKB/Swiss-Prot
      G3UW36
      Related
      ENSMUSP00000127953.2, ENSMUST00000166277.5
      Conserved Domains (1) summary
      pfam13879
      Location:27 → 98
      KIAA1430; KIAA1430 homolog

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      13755508..13794611
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006508821.5 → XP_006508884.1  uncharacterized protein CFAP97D2 isoform X2

      UniProtKB/TrEMBL
      A0A286YE38
      Related
      ENSMUSP00000153486.2, ENSMUST00000214337.2
      Conserved Domains (1) summary
      pfam13879
      Location:27 → 121
      KIAA1430; KIAA1430 homolog

    2. XM_006508820.4 → XP_006508883.1  uncharacterized protein CFAP97D2 isoform X1

      UniProtKB/TrEMBL
      A0A286YE38
      Conserved Domains (1) summary
      pfam13879
      Location:27 → 118
      KIAA1430; KIAA1430 homolog

    RNA

    1. XR_001778451.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    G3UW36.1 GenPept UniProtKB/Swiss-Prot:G3UW36

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials