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    1700027F09Rik RIKEN cDNA 1700027F09 gene [ Mus musculus (house mouse) ]

    Gene ID: 69999, updated on 26-Oct-2024

    Summary

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    Official Symbol
    1700027F09Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700027F09 geneprovided by MGI
    Primary source
    MGI:MGI:1917249
    See related
    AllianceGenome:MGI:1917249
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward testis adult (RPKM 4.7) See more
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    Genomic context

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    See 1700027F09Rik in Genome Data Viewer
    Location:
    5; 5 C3.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (64612156..64625285, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (64454813..64467942, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene TBC1 domain family, member 1 Neighboring gene peptidylprolyl isomerase A pseudogene 22 Neighboring gene STARR-positive B cell enhancer ABC_E6331 Neighboring gene STARR-seq mESC enhancer starr_13205 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:64773751-64773860 Neighboring gene STARR-seq mESC enhancer starr_13208 Neighboring gene STARR-seq mESC enhancer starr_13209 Neighboring gene predicted gene 43837 Neighboring gene RIKEN cDNA C030018K13 gene Neighboring gene predicted gene, 31363 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:64879054-64879237 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:64888210-64888393 Neighboring gene STARR-seq mESC enhancer starr_13213 Neighboring gene STARR-seq mESC enhancer starr_13214 Neighboring gene predicted gene, 52815

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040681.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      AC123952, AK006413

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      64612156..64625285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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