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    Ccdc138 coiled-coil domain containing 138 [ Mus musculus (house mouse) ]

    Gene ID: 76138, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ccdc138provided by MGI
    Official Full Name
    coiled-coil domain containing 138provided by MGI
    Primary source
    MGI:MGI:1923388
    See related
    Ensembl:ENSMUSG00000038010 AllianceGenome:MGI:1923388
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    6230424H07Rik
    Summary
    Orthologous to human CCDC138 (coiled-coil domain containing 138). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Broad expression in testis adult (RPKM 2.3), CNS E11.5 (RPKM 1.9) and 18 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Ccdc138 in Genome Data Viewer
    Location:
    10 B4; 10 29.35 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (58333523..58412066)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (58497699..58576244)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6854 Neighboring gene LIM and senescent cell antigen-like domains 1 Neighboring gene predicted gene, 23058 Neighboring gene STARR-positive B cell enhancer ABC_E2936 Neighboring gene RAN binding protein 2 Neighboring gene STARR-positive B cell enhancer ABC_E10608 Neighboring gene STARR-positive B cell enhancer ABC_E10609 Neighboring gene STARR-seq mESC enhancer starr_26758 Neighboring gene predicted gene, 18042 Neighboring gene ectodysplasin-A receptor Neighboring gene predicted gene, 36158

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    2. BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain. Pourhaghighi R, et al. Cell Syst, 2020 Apr 22. PMID 32325033, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 138

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162956.1 → NP_001156428.1  coiled-coil domain-containing protein 138

      See identical proteins and their annotated locations for NP_001156428.1

      Status: VALIDATED

      Source sequence(s)
      AC158593
      Consensus CDS
      CCDS48565.1
      UniProtKB/Swiss-Prot
      Q0VF22, Q8CG93
      Related
      ENSMUSP00000043040.9, ENSMUST00000036576.10
      Conserved Domains (1) summary
      pfam07798
      Location:229 → 325
      DUF1640; Protein of unknown function (DUF1640)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      58333523..58412066
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030245353.2 → XP_030101213.1  coiled-coil domain-containing protein 138 isoform X4

      Conserved Domains (1) summary
      pfam12128
      Location:30 → 204
      DUF3584; Protein of unknown function (DUF3584)

    2. XM_036156075.1 → XP_036011968.1  coiled-coil domain-containing protein 138 isoform X3

      Conserved Domains (1) summary
      COG1196
      Location:53 → 213
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    3. XM_030245352.2 → XP_030101212.1  coiled-coil domain-containing protein 138 isoform X4

      Conserved Domains (1) summary
      pfam12128
      Location:30 → 204
      DUF3584; Protein of unknown function (DUF3584)

    4. XM_006514273.5 → XP_006514336.1  coiled-coil domain-containing protein 138 isoform X1

      Conserved Domains (1) summary
      pfam12128
      Location:147 → 321
      DUF3584; Protein of unknown function (DUF3584)

    5. XM_036156076.1 → XP_036011969.1  coiled-coil domain-containing protein 138 isoform X3

      Conserved Domains (1) summary
      COG1196
      Location:53 → 213
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    6. XM_036156074.1 → XP_036011967.1  coiled-coil domain-containing protein 138 isoform X2

      Conserved Domains (1) summary
      COG1196
      Location:96 → 256
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    RNA

    1. XR_004936299.1 RNA Sequence

    2. XR_004936298.1 RNA Sequence

    3. XR_004936300.1 RNA Sequence

    4. XR_004936301.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0VF22.1 GenPept UniProtKB/Swiss-Prot:Q0VF22

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
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