U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zfp939 zinc finger protein 939 [ Mus musculus (house mouse) ]

    Gene ID: 233147, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Zfp939provided by MGI
    Official Full Name
    zinc finger protein 939provided by MGI
    Primary source
    MGI:MGI:3036240
    See related
    Ensembl:ENSMUSG00000121502 AllianceGenome:MGI:3036240
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9430025M13Rik
    Expression
    Ubiquitous expression in CNS E18 (RPKM 3.1), CNS E14 (RPKM 2.7) and 28 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Zfp939 in Genome Data Viewer
    Location:
    7 B3; 7 25.48 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (39098903..39126853)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (39449479..39477429)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57511 Neighboring gene STARR-positive B cell enhancer ABC_E8168 Neighboring gene family with sequence similarity 32, member A pseudogene Neighboring gene predicted gene, 51478 Neighboring gene predicted gene 28455 Neighboring gene STARR-seq mESC enhancer starr_18699 Neighboring gene STARR-positive B cell enhancer ABC_E9109 Neighboring gene zinc finger protein 619 Neighboring gene predicted gene, 33989 Neighboring gene STARR-positive B cell enhancer ABC_E6538 Neighboring gene STARR-seq mESC enhancer starr_18702 Neighboring gene ribosomal protein S8 pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    zinc finger protein 939

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001243021.1 → NP_001229950.1  zinc finger protein 939

      Status: VALIDATED

      Source sequence(s)
      AC109210
      Related
      ENSMUST00000243338.1
      Conserved Domains (6) summary
      smart00349
      Location:4 → 63
      KRAB; krueppel associated box
      COG5048
      Location:160 → 571
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:251 → 271
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam01352
      Location:4 → 43
      KRAB; KRAB box
      pfam06409
      Location:56 → 195
      NPIP; Nuclear pore complex interacting protein (NPIP)
      pfam13465
      Location:292 → 314
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. NR_157256.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC109210, AK034698, BB701290
      Related
      ENSMUST00000186855.7

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      39098903..39126853
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030242464.2 → XP_030098324.1  zinc finger protein 939 isoform X4

      Conserved Domains (4) summary
      smart00349
      Location:4 → 63
      KRAB; krueppel associated box
      COG5048
      Location:181 → 342
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:431 → 486
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:213 → 233
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_011250851.3 → XP_011249153.1  zinc finger protein 939 isoform X3

      Conserved Domains (3) summary
      smart00349
      Location:4 → 63
      KRAB; krueppel associated box
      COG5048
      Location:181 → 342
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:213 → 233
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_017322169.3 → XP_017177658.1  zinc finger protein 939 isoform X7

      Conserved Domains (3) summary
      COG5048
      Location:73 → 234
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:323 → 378
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:105 → 125
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_011250848.4 → XP_011249150.1  zinc finger protein 939 isoform X1

      Conserved Domains (3) summary
      smart00349
      Location:4 → 57
      KRAB; krueppel associated box
      COG5048
      Location:188 → 349
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:220 → 240
      ZF_C2H2; C2H2 Zn finger [structural motif]

    5. XM_036152962.1 → XP_036008855.1  zinc finger protein 939 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:149 → 310
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:399 → 454
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:181 → 201
      ZF_C2H2; C2H2 Zn finger [structural motif]

    6. XM_036152961.1 → XP_036008854.1  zinc finger protein 939 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:187 → 348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437 → 492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219 → 239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:1 → 31
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    7. XM_036152963.1 → XP_036008856.1  zinc finger protein 939 isoform X5

      Conserved Domains (3) summary
      COG5048
      Location:149 → 310
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:399 → 454
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:181 → 201
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_030242463.2 → XP_030098323.1  zinc finger protein 939 isoform X2

      Conserved Domains (4) summary
      COG5048
      Location:187 → 348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437 → 492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219 → 239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:1 → 31
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    9. XM_011250849.2 → XP_011249151.1  zinc finger protein 939 isoform X2

      See identical proteins and their annotated locations for XP_011249151.1

      Conserved Domains (4) summary
      COG5048
      Location:187 → 348
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:437 → 492
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:219 → 239
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl02581
      Location:1 → 31
      KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

    10. XM_036152964.1 → XP_036008857.1  zinc finger protein 939 isoform X6

      Conserved Domains (3) summary
      COG5048
      Location:73 → 234
      COG5048; FOG: Zn-finger [General function prediction only]
      COG5189
      Location:323 → 378
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      sd00017
      Location:105 → 125
      ZF_C2H2; C2H2 Zn finger [structural motif]

    RNA

    1. XR_391336.4 RNA Sequence

      Related
      ENSMUST00000247552.1

    2. XR_004934077.1 RNA Sequence

    3. XR_004934076.1 RNA Sequence

    4. XR_391334.5 RNA Sequence

      Related
      ENSMUST00000244123.1

    5. XR_003946453.2 RNA Sequence

      Related
      ENSMUST00000245274.2

    6. XR_003946454.1 RNA Sequence

    7. XR_004934075.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools