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    E130307A14Rik RIKEN cDNA E130307A14 gene [ Mus musculus (house mouse) ]

    Gene ID: 327744, updated on 22-Oct-2024

    Summary

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    Official Symbol
    E130307A14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E130307A14 geneprovided by MGI
    Primary source
    MGI:MGI:3036287
    See related
    Ensembl:ENSMUSG00000087177 AllianceGenome:MGI:3036287
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    betaFaar
    Expression
    Broad expression in CNS E18 (RPKM 13.3), CNS E14 (RPKM 12.7) and 20 other tissues See more
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    Genomic context

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    See E130307A14Rik in Genome Data Viewer
    Location:
    10 B1; 10 20.88 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (39497407..39608003, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (39621411..39732007, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr10:39089323-39089624 Neighboring gene Fyn proto-oncogene Neighboring gene STARR-seq mESC enhancer starr_26390 Neighboring gene STARR-seq mESC enhancer starr_26392 Neighboring gene predicted gene 16364 Neighboring gene STARR-seq mESC enhancer starr_26396 Neighboring gene predicted gene, 40627 Neighboring gene STARR-seq mESC enhancer starr_26400 Neighboring gene TRAF3 interacting protein 2 Neighboring gene predicted gene, 53621 Neighboring gene predicted gene 8899 Neighboring gene STARR-seq mESC enhancer starr_26404 Neighboring gene REV3 like, DNA directed polymerase zeta catalytic subunit Neighboring gene predicted gene, 22105 Neighboring gene 60S ribosomal protein L15 pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The long non-coding RNA βFaar regulates islet β-cell function and survival during obesity in mice. Zhang F, et al. Nat Commun, 2021 Jun 28. PMID 34183666, Free PMC Article
    2. Venus trap in the mouse embryo reveals distinct molecular dynamics underlying specification of first embryonic lineages. Dietrich JE, et al. EMBO Rep, 2015 Aug. PMID 26142281, Free PMC Article
    3. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    4. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038037.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC119943, AC160403
      Related
      ENSMUST00000151921.10

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      39497407..39608003 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_183198.1: Suppressed sequence

      Description
      NM_183198.1: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials